Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1281
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0007 - 19171122-19172036 33 0.28
12_01_0531 + 4194403-4194417,4194776-4194850,4195136-4195237,419... 31 0.86
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 31 1.1
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 30 1.5
11_06_0010 + 19235419-19236450 30 2.0
03_05_0348 - 23346182-23348022,23348118-23348148 30 2.0
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991 29 2.6
07_03_0097 + 13372270-13372399,13372958-13373457 29 2.6
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 29 2.6
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 29 2.6
09_04_0128 + 14891194-14891946 29 4.6
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 4.6
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 28 6.1
04_03_0841 - 20230920-20230994,20231084-20231164,20231410-202315... 28 6.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 6.1
01_05_0129 + 18431820-18432224 28 6.1
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 28 8.0
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70... 28 8.0
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 28 8.0
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 28 8.0
>11_06_0007 - 19171122-19172036
Length = 304
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 139 QRSLGAAITAASDRLKQLDTN-PSTRRRALDTRHALQELQAMSQVWKTAAMS 291
Q + AA AAS RL++ ++ + RRRA D L++ A SQ W A S
Sbjct: 130 QALVRAAAAAASRRLQETESQLAAARRRAADLEERLRQAAAESQAWCGLARS 181
>12_01_0531 +
4194403-4194417,4194776-4194850,4195136-4195237,
4195453-4195584,4196137-4196193,4196314-4196565,
4196664-4196845,4197244-4197544
Length = 371
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 330 GHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDI 443
GH+KEA +T K V +V+A E+L T R + + +I
Sbjct: 2 GHNKEAHPETNKRVPAIVDALEKLELTSKHRGSQVLEI 39
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 539 EDEEDNVKTLTAEVSELVERTKTFTEESRKRYGGSAPA 652
E+EED + +L ++V V+ TF SRK Y + A
Sbjct: 344 EEEEDEIDSLDSDVDHEVQMPSTFDAASRKGYTSGSQA 381
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/103 (25%), Positives = 48/103 (46%)
Frame = +3
Query: 216 ACIGHQTCTPGTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYE 395
A G Q + + E+ ++ E D VV + + ADD KN+ +V+A +
Sbjct: 355 ALYGQQAPSSDIPEQQSKNEEVKESFSEDKDVVVGNELHNGGQGADDIAKNITGIVKADD 414
Query: 396 RLRQTLAARLADIEDIVSEFDRVSERIDELRQQIEVSMLKSEL 524
+ ++LA+ E+ ++ D+V R DE + + KS+L
Sbjct: 415 Q------SQLAEKEEARAKVDKV-WRKDEPKSNDVIEETKSKL 450
>11_06_0010 + 19235419-19236450
Length = 343
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 139 QRSLGAAITAASDRLKQLDTN-PSTRRRALDTRHALQELQAMSQVWKTAAMS 291
Q + AA AA+ RL++ + + RRRA + L+++ A SQ W A S
Sbjct: 174 QAVVRAASAAAARRLREKEAELDAARRRAAELEERLRQVAAESQAWCGLARS 225
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 209 VLGLVSNCLRRSEAAVMAAPRLLWTSKSWVQRCSCWSAVAARLAKPSQAMFQVS 48
VLGL SN L+ E + W + SW+Q + A+LAK Q + +V+
Sbjct: 278 VLGLKSNKLKLPEKYDLDDTDPFWVANSWLQFPKVAEEIEAQLAKYKQDVDEVN 331
>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
Length = 1165
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 207 HQKACIGHQTCTPGTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTE 362
HQK H+ S ASL+D E ++ D ++SL + KE DD E
Sbjct: 890 HQKIIDEHRKAREAKKS--ASLDDDNKEDMDFVDVLLSLPGENGKEHMDDVE 939
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +3
Query: 78 GQTCRHCRPTATTLDPTFGRPEESRSGHHGCFRSPQTIGY*PEHQKACIGHQTCTPGTSS 257
G CR C + P S HGC SP P +AC G + GT++
Sbjct: 93 GAECRRCILPPIVCSSCYAPPAPSSCSSHGCSCSPSNSS--PPAAEACNGSRQQAHGTAA 150
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 264 ASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDI 443
A+ DSRD L V ++ G + DD + V +VE ER + L I +
Sbjct: 327 AARPDSRDRRLSFPQSVRDVVLGSGEIMVDDVKYTVSHVVEPVERSFSKINRTLHQISEN 386
Query: 444 VSEFDR 461
V + ++
Sbjct: 387 VKQLEK 392
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 288 HRGCLPDLRHRLKFLECMSGVQC-TPSGARVSIQLFEAI*SS 166
H CLP + L+F+E + C TPSG+ S L +A+ SS
Sbjct: 120 HLTCLPAISDDLQFMEGLKAEACQTPSGSHQSSILPDAMSSS 161
>09_04_0128 + 14891194-14891946
Length = 250
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 568 DGRSLRASGAYQNLHGREQKTLRGIRSGRRC 660
DGR R GA + GR Q+ G R G RC
Sbjct: 170 DGRRERVDGAEGSAVGRSQRRRIGEREGERC 200
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/96 (22%), Positives = 46/96 (47%)
Frame = +3
Query: 222 IGHQTCTPGTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERL 401
I ++ + V LE + L E+++ L+ DDT+ ++ L ER+
Sbjct: 164 IAAESSSASAKESVKELEGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERM 223
Query: 402 RQTLAARLADIEDIVSEFDRVSERIDELRQQIEVSM 509
R R + ED E ++E++++L++Q++ S+
Sbjct: 224 R----LRALNSED---EAKLLNEQLEDLKKQLDESV 252
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 491 ANRGLHAKVRTLYVFGEDEEDNVKTLTAEVSELVERTK 604
AN G H + L G E+N+K T VS +VE +K
Sbjct: 217 ANTGKHQYLDGLQKTGGSSENNLKDTTKSVSSVVEPSK 254
>04_03_0841 -
20230920-20230994,20231084-20231164,20231410-20231520,
20232050-20232268
Length = 161
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 360 EKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRV-SERIDELRQQIE 500
EK K+++EAY + A + + ++VSE +R+ ++++EL + ++
Sbjct: 111 EKEYKEILEAYNEKNKEKALLVNRLIELVSESERMRMKKLEELNKTVD 158
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 548 EDNVKTLTAEVSELVERTKTFTEESRKR 631
E V LT EV LV+RT+ +TE++RK+
Sbjct: 848 EAKVSFLT-EVEHLVQRTREYTEKTRKK 874
>01_05_0129 + 18431820-18432224
Length = 134
Score = 28.3 bits (60), Expect = 6.1
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Frame = -2
Query: 474 SSQTRGRIQKQYPLCPRAAPLEFVAISHKPRRGLSRSSRCHRRLPSSGP*AETRQSRRVP 295
+++ R R PL P +PL V ++ R C R + P + + +
Sbjct: 2 AARRRQRPSSSPPLPPEHSPLPSVIVATARARTADPKIACDRSAAAKSPASGSTAAALPT 61
Query: 294 AAHRGCLPDLRHRLK--FLECMSGVQCTPSGARVSIQLFEAI*SSRDGRSETP 142
A R C P HR++ + +G +C P R + A +DG S +P
Sbjct: 62 AKLRRCSPP-HHRIRRHRVPTATGPRCLPPLERAVVITTGA---PKDGGSSSP 110
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 270 LEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDIVS 449
L+ S E+LE V+ R ++ + ++ +L E RLR+TL RLA+ + ++
Sbjct: 367 LQGSHSEVLEQ---VILKQRNDMHKSELERDRLAMELDEE-RRLRETLEHRLAEQQKMLD 422
Query: 450 EFDRVSERIDELRQQIEVSMLKS 518
S D+ I+ LK+
Sbjct: 423 GISNTSISPDQFTDSIQFESLKT 445
>08_01_0098 -
700443-700660,701112-701268,701586-701678,701763-702149,
702755-702829,703486-703609,703693-703832,703904-703993,
704254-704298,704917-705042,705138-705272,705966-706451,
706539-706596,706728-706855,707209-707463
Length = 838
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 252 SSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYER-LRQTLAARL- 425
S + L +R+E+ ++ + + +K+ A ++ +D+ + YER +++ L+ RL
Sbjct: 93 SGKIEKLRAAREEMNKYFPLTPKMWQEWTKDEASLRPESFEDIEKLYERGVQEYLSVRLW 152
Query: 426 ADIEDIVSEFDR 461
D D V E D+
Sbjct: 153 RDYLDFVEENDK 164
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/75 (29%), Positives = 29/75 (38%)
Frame = +1
Query: 82 KRAATADQQLQRWTQLLDVQRSLGAAITAASDRLKQLDTNPSTRRRALDTRHALQELQAM 261
K TA Q L R L++V+ S+ I A + R KQL T L T+ +
Sbjct: 330 KLRLTAKQVLVRNWLLMNVENSMRCLIVAINSRWKQLRRYTQTVIYRLGTQDSCFTSVVA 389
Query: 262 SQVWKTAAMSCWNTP 306
W A N P
Sbjct: 390 EHTWLQNAKKAPNVP 404
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 178 RLKQLDTNPSTRRRALDTRHALQELQAMSQVWKTAAMSCWNTPTLS 315
R ++L + + RR+L R AMSQ+W+ A + ++P S
Sbjct: 243 RGRRLSCSSFSPRRSLSPRALSSSPSAMSQMWRAAVAAVGSSPRAS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,172,317
Number of Sequences: 37544
Number of extensions: 410751
Number of successful extensions: 1730
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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