Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1281
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 37 0.014
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 35 0.044
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 34 0.10
At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2 (G... 33 0.14
At5g52410.2 68418.m06502 expressed protein 33 0.24
At5g52410.1 68418.m06503 expressed protein 33 0.24
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 31 0.72
At2g03720.1 68415.m00332 universal stress protein (USP) family p... 30 1.3
At4g14870.1 68417.m02284 expressed protein 30 1.7
At4g26020.1 68417.m03747 expressed protein weak similarity to ca... 29 2.2
At3g12990.1 68416.m01618 3' exoribonuclease family protein simil... 29 2.2
At1g71080.1 68414.m08203 expressed protein 29 2.2
At3g02710.1 68416.m00262 nuclear associated protein-related / NA... 29 2.9
At2g27280.1 68415.m03278 hypothetical protein 28 5.1
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma... 28 6.7
At1g04920.1 68414.m00489 sucrose-phosphate synthase, putative si... 28 6.7
At5g67040.1 68418.m08452 hypothetical protein contains Pfam prof... 27 8.9
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 8.9
At3g45900.1 68416.m04967 expressed protein 27 8.9
At2g45080.1 68415.m05611 cyclin family protein similar to cyclin... 27 8.9
At2g22720.3 68415.m02692 expressed protein 27 8.9
At2g22720.2 68415.m02691 expressed protein 27 8.9
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put... 27 8.9
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/70 (27%), Positives = 40/70 (57%)
Frame = +3
Query: 282 RDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDIVSEFDR 461
+D++L+ F +SLL+ + + D ++ K+++ E L +TLA + ++ED VS
Sbjct: 2048 KDDVLKGLSFDLSLLQESASNSRDKKDET-KEIMVHVEALEKTLALKTFELEDAVSHAQM 2106
Query: 462 VSERIDELRQ 491
+ R+ E ++
Sbjct: 2107 LEVRLQESKE 2116
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 35.1 bits (77), Expect = 0.044
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +3
Query: 312 VVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQ 491
V+ L G S + DTE + DL E L T+A + D+E V E + +
Sbjct: 350 VMKQLEG-SNDKLHDTETEITDLKERIVTLETTVAKQKEDLEVSEQRLGSVEEEVS--KN 406
Query: 492 QIEVSMLKSELYT 530
+ EV LKSEL T
Sbjct: 407 EKEVEKLKSELET 419
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 321 LLRGHSKEAADDTEKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQQIE 500
LL G S++ D + + DL EA L Q RLAD+E + E + + ++ Q+E
Sbjct: 660 LLTGGSRKGGGDRLRKLHDLAEAESEL-QGHQKRLADVESQIKELQPLQMKFTDVYAQLE 718
Query: 501 VSMLKSELY 527
+ L+
Sbjct: 719 LKTYDLSLF 727
>At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2
(GI:20249) [Oryza sativa]
Length = 314
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = +3
Query: 204 EHQKACIGHQTCTPGTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLV 383
E Q+AC+ Q + A++E E S +E +T+K L+
Sbjct: 202 EKQEACVADQGRVKEKQPEAANVEGGSTSQEERKRKRTSFGEKEEEEEEGETKKMQNQLI 261
Query: 384 EAYERLRQTLAARLADIEDIVSEFDR 461
E ER Q LAA+L +++++ + DR
Sbjct: 262 EILERNGQLLAAQL-EVQNLNLKLDR 286
>At5g52410.2 68418.m06502 expressed protein
Length = 761
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 276 DSRDELLEHADFVVSLLRGHSKE---AADDTEKNVKDLVEAYERLRQTLAARLADIEDIV 446
D+ ++L E A ++ LR +E A + +++ +EA R+R L +L +
Sbjct: 495 DAVEKLAEEAKSELARLRVEKEEETLALERERTSIETEMEALARIRNELEEQLQSLASNK 554
Query: 447 SEFDRVSERIDELRQQIE 500
+E ER D L++Q+E
Sbjct: 555 AEMSYEKERFDRLQKQVE 572
>At5g52410.1 68418.m06503 expressed protein
Length = 510
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 276 DSRDELLEHADFVVSLLRGHSKE---AADDTEKNVKDLVEAYERLRQTLAARLADIEDIV 446
D+ ++L E A ++ LR +E A + +++ +EA R+R L +L +
Sbjct: 244 DAVEKLAEEAKSELARLRVEKEEETLALERERTSIETEMEALARIRNELEEQLQSLASNK 303
Query: 447 SEFDRVSERIDELRQQIE 500
+E ER D L++Q+E
Sbjct: 304 AEMSYEKERFDRLQKQVE 321
>At5g58160.1 68418.m07280 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 31.1 bits (67), Expect = 0.72
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 17 RESNREPENWPILGT*LVKVWPNVPP---LPTNSYNVGPNFWTSRGVSERPSRLLQIASN 187
R + P P LGT L PNVPP LPT + G + P++ L+
Sbjct: 785 RAPSAPPPPPPKLGTKLSPSGPNVPPTPALPTGPLSSGKGRMLRVNLKNSPAKKLK--PY 842
Query: 188 NWI-LTRAPEGVHW 226
+W+ LTRA G W
Sbjct: 843 HWLKLTRAVNGSLW 856
>At2g03720.1 68415.m00332 universal stress protein (USP) family
protein contains Pfam profile PF00582: universal stress
protein family
Length = 165
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 494 NRGLHAKVRTLYVFGEDEEDNVKTLTAEVSELVERTKTFTEESRKRYGG 640
N H V L F + ++ NVKT V E+ KT EES+K+ G
Sbjct: 50 NSRAHELVHPLKNFCQLKKPNVKTEIVVVETAEEKGKTIVEESKKQGAG 98
>At4g14870.1 68417.m02284 expressed protein
Length = 177
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 536 GEDEEDNVKTLTAEVSELVERTKTFTEESRKRYGGSAPADVAQEL 670
GED+E + + AE+ +E+ KT EE K S A+ +E+
Sbjct: 82 GEDKEVEISAIGAEIKAAMEQRKTAEEEKGKNEFLSGVAEEVKEI 126
>At4g26020.1 68417.m03747 expressed protein weak similarity to
cardiac muscle factor 1 [Gallus gallus] GI:14422164
Length = 247
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 360 EKNVKDLVEAYERLRQTLAARLADIEDIVSEFDRVSERIDELRQQIEVSMLK 515
EK D+V +RLRQ L A + I+ + + DRV + E + ++E+ LK
Sbjct: 131 EKATNDMV--IDRLRQDLTANKSHIQAMSKKLDRVVTEV-ECKYELEIQDLK 179
>At3g12990.1 68416.m01618 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 307
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 225 GHQTCTPGTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLR 404
G T T + D+ +++ +E + + + L S+ +A T K ++D VEAY R R
Sbjct: 227 GRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLASSRASA--TTKIIRDAVEAYNRER 284
Query: 405 QT 410
+
Sbjct: 285 SS 286
>At1g71080.1 68414.m08203 expressed protein
Length = 326
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +3
Query: 246 GTSSDVASLEDSRDELLEHADFVVSLLRGHSKEAADDTEKNVKDLVEAYERLRQTLA--- 416
G + +ED D+ EH + + + G D+ EK D E E L + L+
Sbjct: 177 GNVPATSPVEDKNDDGDEHQEIDLVEIFGSFTPENDNAEKENADGGEYVESLNKQLSMTE 236
Query: 417 ARLADI-EDIVSEFDRVSERIDELRQQIEVSMLKSELYTCSA 539
+AD+ +D E ++ + LR Q+ + KS+ + S+
Sbjct: 237 EEIADVDDDSGGEGEKGLNAAEALRAQVNAEVQKSQTSSSSS 278
>At3g02710.1 68416.m00262 nuclear associated protein-related /
NAP-related similar to Nuclear associated protein (NAP)
(NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
Length = 529
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +3
Query: 315 VSLLRGHSKEAADDTE----KNVKDLVEAYER-LRQTLAARLADIEDIVSEFDRVSERID 479
+SLL K + + E K +K LV ++ER LR +AARL +E+ D + D
Sbjct: 32 LSLLEALEKSSHNGVEALDLKTLKKLVLSFERRLRDNIAARLKYVENPEKFADSEVDLHD 91
Query: 480 ELRQQIEVSMLKSELY 527
+L Q+++V ELY
Sbjct: 92 DL-QKLKVLAGAPELY 106
>At2g27280.1 68415.m03278 hypothetical protein
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 479 RAPTANRGLHAK--VRTLYVFGEDEEDNVKTLTAEVSELVERTKT 607
RAP+ + ++ +RT +FGED+E+N + E+S +TK+
Sbjct: 150 RAPSQKKQSSSRPLLRTASIFGEDDEEN--DVEKEISRQASKTKS 192
>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
domain-containing protein similar to SEX1 (starch
excess) [Arabidopsis thaliana] GI:12044358; contains
Pfam profile PF00686: Starch binding domain
Length = 1191
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 DAASGERVEQRTRELADTWNIA-CEGLAKRAATADQQLQRWTQLLDVQRSLGAAITAASD 177
DA+ + RE+ W+ + EG A + D+ + W + L++ R + +
Sbjct: 222 DASFMRSNDHGNREVGRNWDTSGLEGTALKMVEGDRNSKNWWRKLEMVREVIVGSVEREE 281
Query: 178 RLKQL 192
RLK L
Sbjct: 282 RLKAL 286
>At1g04920.1 68414.m00489 sucrose-phosphate synthase, putative
similar to GB:Y11795 from [Craterostigma plantagineum]
Length = 1062
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 137 SRGVSERPSRLLQIASNNWILTRAPEGVHWTPDMHSRNFKRCRKSGRQ 280
+R ER SRL + W LTR + + W N + R+ GR+
Sbjct: 72 TRNSRERNSRLENMCWRIWHLTRKKKQLEWEDSQRIANRRLEREQGRR 119
>At5g67040.1 68418.m08452 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 165
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 500 GLHAKVRTLYVFGEDEEDNVKTLTAEVSEL 589
GLH+K + VF EDE+ + T ++ +L
Sbjct: 72 GLHSKTKRFMVFREDEKSKDFSYTEDIGDL 101
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 179 RSEAAVMAAPRLLWTSKSWV 120
R E VM A ++LWT+ +WV
Sbjct: 1196 RYEKTVMEASKILWTATNWV 1215
>At3g45900.1 68416.m04967 expressed protein
Length = 389
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2
Query: 588 SSETSAVKVFTLSSSSSPNTY 526
SSE AV TLSSS SPN Y
Sbjct: 162 SSERYAVDHLTLSSSPSPNAY 182
>At2g45080.1 68415.m05611 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 222
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 512 KVRT-LYVFG-EDEEDNVKTLTAEVSELVERTKTFTEESRKRYGG 640
K+R+ LY + +D+ + V + + +S L+ERT E + YGG
Sbjct: 10 KLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGG 54
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 539 EDEEDNVKTLTAEVSELVERTKTFTEESRKRYG-GSAPADVAQE 667
EDEE+ + E E +E + E RK+ G GSA A +QE
Sbjct: 26 EDEEEEDEEPPKEELEFLESRQKLKESIRKKMGNGSANAQSSQE 69
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 539 EDEEDNVKTLTAEVSELVERTKTFTEESRKRYG-GSAPADVAQE 667
EDEE+ + E E +E + E RK+ G GSA A +QE
Sbjct: 129 EDEEEEDEEPPKEELEFLESRQKLKESIRKKMGNGSANAQSSQE 172
>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
putative contains Pfam domains PF00560: Leucine Rich
Repeat and PF00069: Protein kinase domain
Length = 772
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 183 QTIGY*PEHQKACIGHQTCTPGTSSDVASLED 278
Q +G+ EH + + H+ C GT D+ ++D
Sbjct: 535 QLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDD 566
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,947
Number of Sequences: 28952
Number of extensions: 307396
Number of successful extensions: 1343
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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