Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    30   0.18 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   2.9  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    26   3.8  
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   5.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.9  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.9  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 386 NIICLSST---YKLTNYVSETIIHRAVSTIIEENRKSCVKLIFIMNFFL 249
           NI  LSST   Y L   +SETI+       ++ NR+ C+KL  +  + L
Sbjct: 322 NIKTLSSTTPEYILLKKLSETIVALGQYNYLDSNRRKCIKLTSLDTYSL 370


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  RFDCEAVYHYRDEVIK 87
           RF CE+VYH  D+V K
Sbjct: 906 RFICESVYHLHDKVSK 921


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 250 WNRPDTEAETTFRLESKT*PQIMRRVQPL 164
           W RPDT+ + T   E +    I RRV  +
Sbjct: 162 WLRPDTKTQVTIEYEEENGAVIPRRVDTI 190


>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 29  SENSDLTAKLYTIIETKSLKFPSTIPSSGQYAEACNLQTRSFPFRKW 169
           S +SD T ++  I+E ++ K P  + S+G+  EA  L      FRK+
Sbjct: 13  STSSD-TQQVQNILELEA-KIPDILSSAGKCIEAIQLNNSLEDFRKY 57


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 350 NYVSETIIHRAVSTIIEENRKSCVKLIFIMNF 255
           NYV+  I+      + +EN+K+ VK   I N+
Sbjct: 373 NYVANKIVDAIDEVVKKENKKAPVKAFQIKNY 404


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 56  LYTIIETKSLKFPSTIPSSGQYAEACNLQTRSFP 157
           +YT++E  S K PS+  S G  A  C   + + P
Sbjct: 121 IYTLLEFLSRKLPSSSTSPGIRAGFCIFPSLNIP 154


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 44  LTAKLYTIIETKSLKFPSTIPSSGQYAEACNLQTRSFPF 160
           LT++L+ +   K    P T P+S +      L TR  PF
Sbjct: 70  LTSRLFALKNDKKFPNPETAPAS-EALNCIRLLTRIIPF 107


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 493 KSGFPNLSNRNALLASR 443
           KS  P+ S+RN +LASR
Sbjct: 97  KSNVPSFSSRNTMLASR 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,261
Number of Sequences: 5004
Number of extensions: 47399
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)