Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232...    29   2.2  
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    28   5.1  

>03_02_0726 +
           10722759-10722857,10722969-10723058,10723141-10723245,
           10723597-10723698,10724721-10724805,10725281-10725365,
           10725473-10725517,10725685-10728672,10728839-10729055,
           10729193-10729765
          Length = 1462

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 162 GSGCTRLIICGYVLDSNLNVVSASVSGR 245
           GSGCT +I+CG V D     V+A   G+
Sbjct: 50  GSGCTHVIVCGLVYDDPA-CVAARAEGK 76


>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 440 RMGGCTYPRGPKRRCTNSNIICLSSTYKLTNYVSETIIHRAVST 309
           ++G CT PR P + CT + +  + S  +L      TI++  V T
Sbjct: 359 KLGTCTQPRDPWKLCTVTQVEEVKSILRLLPIWLCTILYSVVFT 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,556
Number of Sequences: 37544
Number of extensions: 295591
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)