BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1280 (517 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 29 2.3 SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) 29 2.3 SB_51265| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 28 4.0 SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 4.0 SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 9.2 >SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) Length = 1234 Score = 29.1 bits (62), Expect = 2.3 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = -2 Query: 492 NPASPTFRTEMHYLLHGTNGWLYLPARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCF 313 N +P E + +H L L A + K L +QY S V + LCV + P C Sbjct: 724 NSTAPAM-CEQYKAIHVRTVQLQLCANSTKLLMCEQYSSSYVRTVQSYLCVNSTAPAMCE 782 Query: 312 HYN 304 YN Sbjct: 783 QYN 785 >SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) Length = 977 Score = 29.1 bits (62), Expect = 2.3 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = -2 Query: 492 NPASPTFRTEMHYLLHGTNGWLYLPARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCF 313 N +P E + +H L L A + K L +QY S V + LCV + P C Sbjct: 871 NSTAPAM-CEQYKAIHVRTVQLQLCANSTKLLMCEQYSSSYVRTVQSYLCVNSTAPAMCE 929 Query: 312 HYN 304 YN Sbjct: 930 QYN 932 >SB_51265| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 152 Score = 29.1 bits (62), Expect = 2.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 Query: 431 GCTYPRGPKRRCTNSNII 378 GC P GPK RC SN++ Sbjct: 23 GCKEPEGPKHRCFRSNML 40 >SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) Length = 1127 Score = 28.3 bits (60), Expect = 4.0 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Frame = +3 Query: 114 GSTQKPAICKRAA------FPLGSGCTRLIICGYVLDSNLNVVSASVSGRFQEKIHNEY* 275 G T KPA CK AA F + GCT ++ D+ V SA + K++ EY Sbjct: 147 GETDKPAFCKAAAVTLHYLFLVTFGCTAVV----AYDTRY-VASAETTFPICLKVNEEYS 201 Query: 276 FYTGLPV 296 G PV Sbjct: 202 LERGFPV 208 >SB_2045| Best HMM Match : EGF (HMM E-Value=0) Length = 1101 Score = 28.3 bits (60), Expect = 4.0 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = -2 Query: 417 ARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCFHYNRRKQEVLCKINIHYEFFPGTG 241 A A YQ + Y S+ I + C NYY P C Y + + N HY TG Sbjct: 332 ASATARSYQIRGYRSVTGIIVRVYCDTNYYGPTCGTYCIPRDD---NYNGHYTCDSNTG 387 >SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 27.5 bits (58), Expect = 6.9 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 467 PKCITCFTARMGGCTYPRGPKRRCTNSNIIC 375 P TC GC +G KRRC N+ + C Sbjct: 286 PSMSTCIKLVKCGCQPDKGCKRRCINTWLKC 316 >SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2028 Score = 27.1 bits (57), Expect = 9.2 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -3 Query: 377 CLSSTYKLTNYVSETIIHRAVSTIIEENRKSCVKLIFIMNFFLEPARYGGRDY 219 CL+ K+ N ++ S + R SC + IF++ L + YG DY Sbjct: 1870 CLTGKEKVINRFAKVESRWGYSGTSDRIRFSCSRRIFVVGLGLYGSMYGPSDY 1922 >SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 4002 Score = 27.1 bits (57), Expect = 9.2 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 104 PSSGQYAEACNLQTRSFPFRKWLHSSHYLWL-CFRFQSKRSLCLRIGPVPGKNS 262 P+ + +AC + + P ++W + WL C+R + R+L + +G G+N+ Sbjct: 2091 PNRFKTKKACERRCMTLPPKRW-RRQPFGWLGCYRDRHVRALPVLLGRFRGRNA 2143 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,556,081 Number of Sequences: 59808 Number of extensions: 353212 Number of successful extensions: 807 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 807 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1148326654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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