Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    29   2.3  
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)                  29   2.3  
SB_51265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 28   4.0  
SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          28   4.0  
SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.2  

>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 492 NPASPTFRTEMHYLLHGTNGWLYLPARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCF 313
           N  +P    E +  +H     L L A + K L  +QY  S V    + LCV +  P  C 
Sbjct: 724 NSTAPAM-CEQYKAIHVRTVQLQLCANSTKLLMCEQYSSSYVRTVQSYLCVNSTAPAMCE 782

Query: 312 HYN 304
            YN
Sbjct: 783 QYN 785


>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
          Length = 977

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 492  NPASPTFRTEMHYLLHGTNGWLYLPARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCF 313
            N  +P    E +  +H     L L A + K L  +QY  S V    + LCV +  P  C 
Sbjct: 871  NSTAPAM-CEQYKAIHVRTVQLQLCANSTKLLMCEQYSSSYVRTVQSYLCVNSTAPAMCE 929

Query: 312  HYN 304
             YN
Sbjct: 930  QYN 932


>SB_51265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 431 GCTYPRGPKRRCTNSNII 378
           GC  P GPK RC  SN++
Sbjct: 23  GCKEPEGPKHRCFRSNML 40


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +3

Query: 114 GSTQKPAICKRAA------FPLGSGCTRLIICGYVLDSNLNVVSASVSGRFQEKIHNEY* 275
           G T KPA CK AA      F +  GCT ++      D+   V SA  +     K++ EY 
Sbjct: 147 GETDKPAFCKAAAVTLHYLFLVTFGCTAVV----AYDTRY-VASAETTFPICLKVNEEYS 201

Query: 276 FYTGLPV 296
              G PV
Sbjct: 202 LERGFPV 208


>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -2

Query: 417 ARAQKTLYQQQYYLSIVNI*INKLCVGNYYPPGCFHYNRRKQEVLCKINIHYEFFPGTG 241
           A A    YQ + Y S+  I +   C  NYY P C  Y   + +     N HY     TG
Sbjct: 332 ASATARSYQIRGYRSVTGIIVRVYCDTNYYGPTCGTYCIPRDD---NYNGHYTCDSNTG 387


>SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 467 PKCITCFTARMGGCTYPRGPKRRCTNSNIIC 375
           P   TC      GC   +G KRRC N+ + C
Sbjct: 286 PSMSTCIKLVKCGCQPDKGCKRRCINTWLKC 316


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 377  CLSSTYKLTNYVSETIIHRAVSTIIEENRKSCVKLIFIMNFFLEPARYGGRDY 219
            CL+   K+ N  ++       S   +  R SC + IF++   L  + YG  DY
Sbjct: 1870 CLTGKEKVINRFAKVESRWGYSGTSDRIRFSCSRRIFVVGLGLYGSMYGPSDY 1922


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 104  PSSGQYAEACNLQTRSFPFRKWLHSSHYLWL-CFRFQSKRSLCLRIGPVPGKNS 262
            P+  +  +AC  +  + P ++W     + WL C+R +  R+L + +G   G+N+
Sbjct: 2091 PNRFKTKKACERRCMTLPPKRW-RRQPFGWLGCYRDRHVRALPVLLGRFRGRNA 2143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,081
Number of Sequences: 59808
Number of extensions: 353212
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)