Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase...    29   2.8  
AY070529-1|AAL48000.1|  746|Drosophila melanogaster GM13460p pro...    29   2.8  
AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA...    29   2.8  
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase...    29   4.9  
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera...    29   4.9  

>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
            polymerase-primase 180 kdasubunit protein.
          Length = 1490

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 488  RLPQPFEPKCITCFTARMGGCTYPRGPKRRCTNSNIICLSSTYK 357
            RL +PF  +C+TC T ++    Y  GP    +NS+I  L    K
Sbjct: 1289 RLCEPFRFQCVTCKTEQLMASAYRPGP----SNSHIAVLQQCAK 1328


>AY070529-1|AAL48000.1|  746|Drosophila melanogaster GM13460p
           protein.
          Length = 746

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 488 RLPQPFEPKCITCFTARMGGCTYPRGPKRRCTNSNIICLSSTYK 357
           RL +PF  +C+TC T ++    Y  GP    +NS+I  L    K
Sbjct: 545 RLCEPFRFQCVTCKTEQLMASAYRPGP----SNSHIAVLQQCAK 584


>AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA
            protein.
          Length = 1488

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 488  RLPQPFEPKCITCFTARMGGCTYPRGPKRRCTNSNIICLSSTYK 357
            RL +PF  +C+TC T ++    Y  GP    +NS+I  L    K
Sbjct: 1287 RLCEPFRFQCVTCKTEQLMASAYRPGP----SNSHIAVLQQCAK 1326


>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
            alpha protein.
          Length = 1505

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 488  RLPQPFEPKCITCFTARMGGCTYPRGPKRRCTNSNIICL 372
            RL +PF  +C+TC T ++    Y  GP    +NS+I  L
Sbjct: 1286 RLCEPFRFQCVTCKTEQLMASAYRPGP----SNSHIAVL 1320


>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
            alpha 180K subunit protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 488  RLPQPFEPKCITCFTARMGGCTYPRGPKRRCTNSNIICL 372
            RL +PF  +C+TC T ++    Y  GP    +NS+I  L
Sbjct: 1286 RLCEPFRFQCVTCKTEQLMASAYRPGP----SNSHIAVL 1320


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,971,719
Number of Sequences: 53049
Number of extensions: 517583
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)