Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 35  NSDLTAKLYTIIETKSLKFPS---TIPSSGQY-AEACNLQTRSFPFRKWLHSSHY 187
           N+  + K+YT  +  S++FP+    +P+ G Y  + CN   R+ PF+   H + Y
Sbjct: 54  NNQQSEKVYTKAQRSSVRFPTYDGLLPAGGTYICDECNSDERT-PFQLCEHKAIY 107


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 428 CTYPRGPKRRCTNSNIICLSSTYKLTNYVSETIIH 324
           C   + P  R TN+N IC+ +T  L N V   IIH
Sbjct: 166 CAPDKHPVTRFTNANAICIPTTLLLVNLV--IIIH 198


>Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical
           protein F25H9.1 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 485 LPQPFEPKCITCFTARMGG 429
           LP PF P  ITC+T+   G
Sbjct: 207 LPYPFSPPTITCYTSGYDG 225


>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 428 CTYPRGPKRRCTNSNIICLSSTYKLTNYVSETIIHRAVST 309
           C YPRG +  C N + + +++ +  TN        R   T
Sbjct: 79  CNYPRGSEAPCCNGSPVEINNFFHCTNATKSAPAKRCCPT 118


>AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical
           protein T24E12.9 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 250 WNRPDTEAETTFRLESKT*PQIMRRVQPLPKG 155
           + RPD    +T + +SKT P   +R + LP G
Sbjct: 432 FGRPDAPGPSTLKRQSKTSPVKAKRKKNLPNG 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,019
Number of Sequences: 27780
Number of extensions: 272100
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)