Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   10.0 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   10.0 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   10.0 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 451 ASRHEWVVVPTRAGPKDAV 395
           A+RH +  VP  AGP+  V
Sbjct: 471 ANRHYYAFVPFSAGPRSCV 489


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 392 WYSVFWARAGRYN 430
           W SVFW  A ++N
Sbjct: 164 WLSVFWGSAWQWN 176


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 4/8 (50%), Positives = 6/8 (75%)
 Frame = +2

Query: 386 CCWYSVFW 409
           CCW+ + W
Sbjct: 488 CCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 4/8 (50%), Positives = 6/8 (75%)
 Frame = +2

Query: 386 CCWYSVFW 409
           CCW+ + W
Sbjct: 541 CCWWKICW 548


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 146 RSFPFRKWLHSSHYLWLCFRFQSKRSLCL 232
           ++    K  H +HYL    R +   +LCL
Sbjct: 19  QTLELEKEFHYNHYLTRRRRIEIAHALCL 47


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 253 SWNRPDTEAETT 218
           SW+RP   A+TT
Sbjct: 46  SWSRPRESAQTT 57


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 359 KLTNYVSETIIHRAVSTII 303
           KL  YVSET  + +V TI+
Sbjct: 108 KLRAYVSETSSYVSVLTIV 126


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 120 YCPELGIVEGNFNDFVSIMVYSFAVKSEFSLQIFHI 13
           +C   G+V G F     ++V  F + +E  +++  I
Sbjct: 246 FCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGI 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,483
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)