Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1280
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05675.2 68416.m00633 expressed protein                             29   1.9  
At3g05675.1 68416.m00632 expressed protein                             29   1.9  
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro...    28   3.2  
At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein co...    27   7.5  
At3g62500.1 68416.m07022 expressed protein hypothetical proteins...    27   9.9  
At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putat...    27   9.9  

>At3g05675.2 68416.m00633 expressed protein
          Length = 441

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 237 IRRQRLRLDWNLKHSHR**DECNHF---LKGKLRVCKLQASAYCPELGIVEGNFNDFVSI 67
           +R +  R DW   HS    ++  +F   L  K   CK+  S YC E+   E +++  +++
Sbjct: 26  LRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDSRYCVEVICQESDYDHHINL 85

Query: 66  MVYSFAVKSE 37
           +   + V  +
Sbjct: 86  LRLLYVVSDD 95


>At3g05675.1 68416.m00632 expressed protein
          Length = 441

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 237 IRRQRLRLDWNLKHSHR**DECNHF---LKGKLRVCKLQASAYCPELGIVEGNFNDFVSI 67
           +R +  R DW   HS    ++  +F   L  K   CK+  S YC E+   E +++  +++
Sbjct: 26  LRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDSRYCVEVICQESDYDHHINL 85

Query: 66  MVYSFAVKSE 37
           +   + V  +
Sbjct: 86  LRLLYVVSDD 95


>At5g07780.1 68418.m00890 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 464

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 46  DCEAVYHYRDEVIKIPLNDS*FRAVRRSLQF 138
           +CE ++ Y  EV+K+P  +S  R     +QF
Sbjct: 210 NCEQLFQYLQEVVKVPRVESKLRVFSFKIQF 240


>At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 631

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 267 HYEFFPGTGPIRRQRLRLDWNLKHSHR**DECNHFLKGKLRVCKLQASAYCP 112
           H +F PG    +    +L+W LKH     +E + F K  +    L +S Y P
Sbjct: 509 HVKFVPGDSGSKTLSCKLEWRLKHP----EEDSVFPKYNVYAENLSSSEYRP 556


>At3g62500.1 68416.m07022 expressed protein hypothetical proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 374

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 165 SGCTRLIICGYVLDSNLNVVSASVSGRFQ 251
           +GC  + I  +VLDS  ++++ S+SGR +
Sbjct: 175 AGCDWMPIGAFVLDSRTSLLTESLSGRLK 203


>At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative nearly
           identical to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 990

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +2

Query: 38  SDLTAKLYTIIETKSLKFPSTIPSSGQYAEACNLQTRSFPFRKWLHSSHYLWLCFRFQSK 217
           S  ++ L++     S    ST PSS       +  T S  FR+W HS H     FRF S+
Sbjct: 18  SSRSSSLFSFRSVLSPSVSSTSPSS--LLARRSFGTISPAFRRWSHSFHSKPSPFRFTSQ 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,957
Number of Sequences: 28952
Number of extensions: 242438
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)