Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1279
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   164   1e-39
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   111   1e-23
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ...    33   4.6  
UniRef50_Q98Q49 Cluster: HEAT SHOCK ATP-DEPENDENT PROTEASE; n=2;...    33   6.0  
UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, who...    33   6.0  
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  164 bits (399), Expect = 1e-39
 Identities = 77/137 (56%), Positives = 93/137 (67%)
 Frame = +2

Query: 215 GQKPKTYPF*RNSRVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ*VMDVYLVAN 394
           G+  K   F     VKPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQ VMDV+LV N
Sbjct: 68  GKNQKLTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVN 127

Query: 395 LKPTRPNRCYKFLAQHAXRWEEDYVPHEVIRIVEPSYVA*TTNTELVWLKRXXXXXXXXX 574
           ++PTRPNRC++FLAQHA R + +YVPH+VIRIVEPSYV       +   K+         
Sbjct: 128 MRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNL 187

Query: 575 XXXXXXXXXXFVNRVIW 625
                     F+++VIW
Sbjct: 188 HAEYTTSFESFIDKVIW 204



 Score =  120 bits (288), Expect = 4e-26
 Identities = 52/73 (71%), Positives = 63/73 (86%)
 Frame = +3

Query: 36  YSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGP 215
           Y+Y+P +G+TYVYDNKYYKNLG +IKNAKRK   +E E +E++ D LD Y+VAEDPF+GP
Sbjct: 8   YNYSPHLGKTYVYDNKYYKNLGHVIKNAKRKHDALEREADERELDHLDKYLVAEDPFMGP 67

Query: 216 GKNQKLTLFKEIR 254
           GKNQKLTLFKEIR
Sbjct: 68  GKNQKLTLFKEIR 80


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  111 bits (268), Expect = 1e-23
 Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
 Frame = +2

Query: 215 GQKPKTYPF*RNSRVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ*VMDVYLVAN 394
           G+  K   F     +K +TMKL +NWSG+E+LRE WT F+ED+FPI N Q   DV+L   
Sbjct: 66  GKHVKMVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIR 125

Query: 395 LKPTRPNRCYKFLAQHAXRWEEDYVPHEVIRIVEPSYVA*TTNTELVWLKR-XXXXXXXX 571
             P + NR Y+FLAQH  R +ED+VP + IR++EP Y+   T   L  LKR         
Sbjct: 126 CTPNKSNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYLQGNT-VSLSLLKRDGGCPMMKI 184

Query: 572 XXXXXXXXXXXFVNRVIW 625
                      FV+R++W
Sbjct: 185 RQQFNELDLEQFVDRILW 202



 Score = 68.1 bits (159), Expect = 2e-10
 Identities = 27/68 (39%), Positives = 48/68 (70%)
 Frame = +3

Query: 51  TIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQK 230
           T  ++Y+YDNKYY+ LG +I +AK++KH  + E+  ++   L+ +++  DP  GPGK+ K
Sbjct: 11  TSAKSYIYDNKYYRGLGDIINSAKKRKHDQDWEKHAEERRALNGFILPLDPRTGPGKHVK 70

Query: 231 LTLFKEIR 254
           + +F+E+R
Sbjct: 71  MVMFQEVR 78


>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 468

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 296 GKEFLRETWTRFVEDSFPIVNDQ*VMDVYLVANLKP--TRPNRCYKFLAQHAXRWEEDY 466
           G EFL   +T FV+ ++  +N++   D+Y  A ++    +   C  F A     ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161


>UniRef50_Q98Q49 Cluster: HEAT SHOCK ATP-DEPENDENT PROTEASE; n=2;
           Mycoplasma|Rep: HEAT SHOCK ATP-DEPENDENT PROTEASE -
           Mycoplasma pulmonis
          Length = 842

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
 Frame = +3

Query: 3   FVIKKPINMPNYSYTPTIGR-----TYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQW 167
           F ++  + +P    T  +GR           K YKN   ++     K+ L+E E++ K++
Sbjct: 6   FAVRGQVLLPFIEITLDVGRESSKIALELSTKNYKNEIVVVSQENPKQELIESEKDLKEF 65

Query: 168 DLLDNYMVAEDPFLGPGKNQKLTL--FKEIRV 257
            LL   +VA++P  G   N K+TL  FK ++V
Sbjct: 66  GLLCK-IVAQNPSKG---NIKVTLLPFKRVKV 93


>UniRef50_A0DH03 Cluster: Chromosome undetermined scaffold_5, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_5, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2443

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = -3

Query: 93   FCNIYCRTR----KYARWWGCMNNSAY 25
            +CNI+ RTR      A +WGCMN S Y
Sbjct: 1648 YCNIWYRTRYSCENIANYWGCMNTSMY 1674


>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus niger|Rep: Putative uncharacterized protein
           - Aspergillus niger
          Length = 329

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +3

Query: 282 SSTGAAKSFCVKLGPVLLRTASPL*TTNR*WTCTSSP-TSNPHAPTGATSSXLNTLL 449
           S++ + ++  ++L P++L  ASP  +T   +T T+SP TS P   + ATS  L  +L
Sbjct: 39  SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,160,586
Number of Sequences: 1657284
Number of extensions: 14671358
Number of successful extensions: 39119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39074
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)