Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1279
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   3.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.5  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.5  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   7.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.6  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.6  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   9.6  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +3

Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKKTTCPTK*SELWSHP 503
           T++PL TTN    CT+S TS P+  T  TS+ L T      T+ P   + + S P
Sbjct: 441 TSTPLATTN----CTTS-TSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKKTTCP 473
           T++PL TTN    CT+S TS P+  T  TS+ L T      T+ P
Sbjct: 464 TSTPLTTTN----CTTS-TSIPYTSTPVTSTPLTTTNCTTSTSVP 503


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 380 YLVANLKPTRPNRCYKFLAQHAXRWEEDYVPHEVIRIVEPSYV 508
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 508 GMNNEYRISLAKKGGGCPIMNIHS 579
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 281 LTSWYRVSHANFFKKGKFLVFARS*KGIFGNHV 183
           +  W+R+SH   F++  FL++      IF  H+
Sbjct: 556 MLKWFRLSHVLRFERLAFLLYENHFLEIFNRHL 588


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 161
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 614 GSQTNSNELVYSLWMFMIGQPPPFLARLILYSLFMPR 504
           G  T+S  L+YS W  ++ +   FL ++ ++  F+ R
Sbjct: 80  GLATSSGILLYSSWASVMQESFHFLEKISMFDTFLVR 116


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 72  YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 200
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 224  PKTYPF*RNSRVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 364
            P T  + R+S +  +T  L ++ S K+F+RET+T   + + P V D+
Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 560 GQPPPFLARLILYSLFMPRRMAPQ 489
           G PPP    L+ Y + MP  + PQ
Sbjct: 283 GSPPPMPIELLSYIINMPPPLLPQ 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,380
Number of Sequences: 5004
Number of extensions: 61146
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)