BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1279 (656 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4 SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.8 SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 3.1 SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.5 SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 5.5 SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 7.3 SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.6 SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 9.6 SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 9.6 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 27.9 bits (59), Expect = 1.4 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = +3 Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKKTTCPTK*SELWSHP 503 T++PL TTN CT+S TS P+ T TS+ L T T+ P + + S P Sbjct: 441 TSTPLATTN----CTTS-TSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490 Score = 27.5 bits (58), Expect = 1.8 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = +3 Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKKTTCP 473 T++PL TTN CT+S TS P+ T TS+ L T T+ P Sbjct: 464 TSTPLTTTN----CTTS-TSIPYTSTPVTSTPLTTTNCTTSTSVP 503 >SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 335 Score = 27.5 bits (58), Expect = 1.8 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +2 Query: 380 YLVANLKPTRPNRCYKFLAQHAXRWEEDYVPHEVIRIVEPSYV 508 YL+ +L PN Y Q A + +DY E IRI+E V Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74 >SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr 3|||Manual Length = 162 Score = 26.6 bits (56), Expect = 3.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 508 GMNNEYRISLAKKGGGCPIMNIHS 579 G++NE I L +K G CP + I+S Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128 >SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 817 Score = 25.8 bits (54), Expect = 5.5 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -1 Query: 281 LTSWYRVSHANFFKKGKFLVFARS*KGIFGNHV 183 + W+R+SH F++ FL++ IF H+ Sbjct: 556 MLKWFRLSHVLRFERLAFLLYENHFLEIFNRHL 588 >SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces pombe|chr 2|||Manual Length = 622 Score = 25.8 bits (54), Expect = 5.5 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +3 Query: 18 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 161 P+ M + S P+ VY+ + L C NAK + LV+ + EE+ Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434 >SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 25.4 bits (53), Expect = 7.3 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 614 GSQTNSNELVYSLWMFMIGQPPPFLARLILYSLFMPR 504 G T+S L+YS W ++ + FL ++ ++ F+ R Sbjct: 80 GLATSSGILLYSSWASVMQESFHFLEKISMFDTFLVR 116 >SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 327 Score = 25.0 bits (52), Expect = 9.6 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = +3 Query: 72 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 200 Y+ Y L L K + K+ K + +H+ + W LLD +D Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281 >SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 25.0 bits (52), Expect = 9.6 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +2 Query: 224 PKTYPF*RNSRVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 364 P T + R+S + +T L ++ S K+F+RET+T + + P V D+ Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063 >SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 25.0 bits (52), Expect = 9.6 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -1 Query: 560 GQPPPFLARLILYSLFMPRRMAPQ 489 G PPP L+ Y + MP + PQ Sbjct: 283 GSPPPMPIELLSYIINMPPPLLPQ 306 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,910,380 Number of Sequences: 5004 Number of extensions: 61146 Number of successful extensions: 166 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -