Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1279
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.15 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   2.5  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  29   2.5  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   7.7  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   7.7  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 48  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 197
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 219 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 76
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/90 (26%), Positives = 39/90 (43%)
 Frame = +2

Query: 140 RT*TRGEAMGSSRQLHGCRRSLFRTGQKPKTYPF*RNSRVKPDTMKLIVNWSGKEFLRET 319
           R+ T     G S+Q+     ++F+ G+K       R   +K     + V W   E  RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT-----REKALKKGIHLVTVLWV--ESCRET 175

Query: 320 WTRFVEDSFPIVNDQ*VMDVYLVANLKPTR 409
             R  E+ FP++    +    L+  LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 185
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 185
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,732
Number of Sequences: 59808
Number of extensions: 463139
Number of successful extensions: 1449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)