Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1279
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 31 0.54
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 29 2.9
U64848-9|AAB04887.1| 128|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 8.9
EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha 1,2-fuc... 27 8.9
AL117207-6|CAB60396.2| 372|Caenorhabditis elegans Hypothetical ... 27 8.9
AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical... 27 8.9
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 593 ELVYSLWMFMIGQPPPFLARLILYSLFMPRRM 498
E + +W F+ G PPPF +++ F+P+ +
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVPQML 182
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 30.7 bits (66), Expect = 0.95
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 SSTGAAKSFCVKLGPVLLRTASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKK 461
SST + S + + T++P T T TS+PTS + T A + +
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220
Query: 462 TT-CPTK*SELWSHPT 506
TT CPTK HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 490 NSDYFVGHVVF-FPPXSVLSXELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 314
NS YFVGH F F S +++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 313 TQKLFAAPVDD*LHGIGFHTRI 248
+L A P+D L + RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 490 NSDYFVGHVVF-FPPXSVLSXELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 314
NS YFVGH F F S +++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 313 TQKLFAAPVDD*LHGIGFHTRI 248
+L A P+D L + RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 490 NSDYFVGHVVF-FPPXSVLSXELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 314
NS YFVGH F F S +++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 313 TQKLFAAPVDD*LHGIGFHTRI 248
+L A P+D L + RI
Sbjct: 1538 EVRL-AKPLDPELQHVESILRI 1558
>U64848-9|AAB04887.1| 128|Caenorhabditis elegans Hypothetical
protein C50E3.3 protein.
Length = 128
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 413 WGVWV*GWRRGTRPSPIGRLQWGSCPQQNGSKFHAKTLCRSS 288
WGVW GTR + G + C G KF+ KTL S
Sbjct: 24 WGVWF----DGTRKTKCGPSELTQCNSLKGFKFNDKTLVSKS 61
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSS-XLNTLLGGKKTTCPTK*SELWSHPT 506
T +P TT T T++PT+ PT T++ T + TT PT + + PT
Sbjct: 179 TTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPT 235
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 339 TASPL*TTNR*WTCTSSPTSNPHAPTGATSSXLNTLLGGKKTT 467
T +P TT T T++PT+ APT T++ T TT
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTT 214
>Z99710-9|CAN99658.1| 402|Caenorhabditis elegans Hypothetical
protein F08A8.5b protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 418 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 302
P G G ++ + + +H + +AV+N T PSF + L
Sbjct: 91 PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 129
>Z99710-8|CAB16868.1| 383|Caenorhabditis elegans Hypothetical
protein F08A8.5a protein.
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 418 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 302
P G G ++ + + +H + +AV+N T PSF + L
Sbjct: 72 PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 593 ELVYSLWMFMIGQPPPFLARLILYSLFMPRRM 498
E V +W F PPPF +++ F+P+ +
Sbjct: 179 EHVIEIWEFFADSPPPFSKCVMILMYFVPQML 210
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 174 EDPIASPLVHVRLGASCAWRF**DSPSFCN 85
E PI S V R G SC + SP FCN
Sbjct: 647 ECPIGSVEVDPRFGTSCRYSLQCPSPYFCN 676
>EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha
1,2-fucosyltransferase protein.
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 418 PVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSFTQKL 302
P G G ++ + + +H + +AV+N T PSF + L
Sbjct: 72 PSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETL 110
>AL117207-6|CAB60396.2| 372|Caenorhabditis elegans Hypothetical
protein Y60A3A.8 protein.
Length = 372
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 18 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 143
PI+ P ++ P + ++ V + YKN CL K +K + LV+
Sbjct: 2 PISEPTWAELPFLFKSAVVELLPYKNRCCLRKCSKSDQFLVD 43
>AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical
protein F56D6.15 protein.
Length = 395
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 372 WTCTSSPTSNPHA--PTGATSSXLNTLLGGKKT 464
+ C+ PT P A PT T++ +N LGG++T
Sbjct: 116 FVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,914
Number of Sequences: 27780
Number of extensions: 350993
Number of successful extensions: 1006
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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