Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1278
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...   102   2e-23
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...   102   2e-23
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...   102   2e-23
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    27   1.2  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    24   6.7  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   8.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   8.8  

>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  102 bits (244), Expect = 2e-23
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +3

Query: 87  VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
           +LRDNIQGITKPAIR LAR GGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHA+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAK 78



 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 21/26 (80%), Positives = 26/26 (100%)
 Frame = +2

Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
           +RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score =  102 bits (244), Expect = 2e-23
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +3

Query: 87  VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
           +LRDNIQGITKPAIR LAR GGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHA+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAK 78



 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 21/26 (80%), Positives = 26/26 (100%)
 Frame = +2

Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
           +RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score =  102 bits (244), Expect = 2e-23
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +3

Query: 87  VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
           +LRDNIQGITKPAIR LAR GGVKRIS L+Y ETR VLK+FLENVIRDAVTYTEHA+
Sbjct: 22  ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAK 78



 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 21/26 (80%), Positives = 26/26 (100%)
 Frame = +2

Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
           +RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct: 78  KRKTVTSLDVVYSLKRQGRTIYGFGG 103


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 207 FLENVIRDAVTYTEHARGRPSPL 275
           + + +I+D+  Y EH+RG+ +P+
Sbjct: 47  YTQQLIQDSQVYAEHSRGQNAPI 69


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 257 SGVFGVCDSVADHVFEEHFENAAGLXVYKTGDTFHST 147
           S + GV  S A+HV   H        V  TG   H T
Sbjct: 83  SAINGVAGSYAEHVPVVHIVGMPSTKVQDTGALLHHT 119


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 177 YXETRGVLKVFLENVIRDAVTYTEHA 254
           + E R  LK   EN+IR+   Y E A
Sbjct: 46  FAERRNFLKALKENIIRNQDKYAEIA 71


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 223 SATLSHTPNTPEEDRHRYGCCVRSETPRSHP 315
           S  L + P+  E+  ++YGCC +     S+P
Sbjct: 101 SIFLEYIPSEEEKLSNKYGCCCQFAFVISNP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,816
Number of Sequences: 5004
Number of extensions: 22850
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)