Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1278
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0780 - 20500344-20500655 109 5e-25
09_06_0213 - 21610887-21611198 109 5e-25
09_04_0227 + 15861410-15861721 109 5e-25
07_03_0825 + 21773710-21774021 109 5e-25
05_05_0150 + 22758060-22758371 109 5e-25
05_05_0128 - 22591720-22592031 109 5e-25
04_04_0926 - 29462363-29462674 109 5e-25
03_01_0134 + 1060551-1060862 109 5e-25
02_05_0333 - 28012829-28013140 109 5e-25
01_06_1262 + 35833882-35834193 109 5e-25
05_05_0130 - 22598744-22599043,22599296-22599307 90 6e-19
03_01_0245 + 1916718-1917443,1917534-1917719 29 0.88
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 29 1.2
06_01_1181 + 10148653-10149405 28 2.7
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 3.6
02_05_0591 - 30183105-30183869 27 3.6
01_02_0078 - 10894871-10895841,10897268-10898426 27 3.6
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 27 4.7
11_04_0444 + 17816207-17817436 27 6.2
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 27 6.2
07_03_0999 - 23216665-23217419,23217626-23217956 27 6.2
06_03_0334 - 19660526-19661755 27 6.2
04_04_0206 + 23595268-23595279,23595475-23596317,23597037-235970... 27 6.2
04_03_0320 - 14316934-14318550 26 8.2
01_06_1284 + 35994595-35995074 26 8.2
>10_08_0780 - 20500344-20500655
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>09_06_0213 - 21610887-21611198
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>09_04_0227 + 15861410-15861721
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>07_03_0825 + 21773710-21774021
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>05_05_0150 + 22758060-22758371
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>05_05_0128 - 22591720-22592031
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>04_04_0926 - 29462363-29462674
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>03_01_0134 + 1060551-1060862
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>02_05_0333 - 28012829-28013140
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>01_06_1262 + 35833882-35834193
Length = 103
Score = 109 bits (263), Expect = 5e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 9e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>05_05_0130 - 22598744-22599043,22599296-22599307
Length = 103
Score = 89.8 bits (213), Expect = 6e-19
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHA 254
V R IQGI KP IR LAR GGVKRISGLIY ETRGVL++FL+NVI DA+TYTEHA
Sbjct: 22 VFRGYIQGIAKPVIRRLARKGGVKRISGLIYKETRGVLEIFLKNVICDAITYTEHA 77
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 257 RKTVTAMDVVYALKRQGRTLYGFGG 331
RKTV AMDVVYALK QGRT+Y FGG
Sbjct: 79 RKTVMAMDVVYALKLQGRTIYDFGG 103
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 29.5 bits (63), Expect = 0.88
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +1
Query: 208 SSKT*SATLSHTPNTPEEDRHRYGCCVRSETPR 306
SS T SA TP TP R C VRS TPR
Sbjct: 85 SSTTTSARTPRTPKTPCTPTARRLCGVRSRTPR 117
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVT 239
+LR T +R R V R S L+ GVL V LENV+ D T
Sbjct: 120 LLRTTTAEPTPEGVRWTVRKD-VTRYSALLRSPPGGVLSVMLENVVNDKYT 169
>06_01_1181 + 10148653-10149405
Length = 250
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 230 RCHIHRTRQRKTVTAMDVVYALKRQG 307
RCH RKTVTA D+V+A+ R G
Sbjct: 81 RCH---REHRKTVTAEDLVWAMDRLG 103
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 178 TKRPAAFSKCSSKT*SATLSHTPNTPEEDRHRYGCCVRSETPR 306
T P SK SSKT S+ +S +PE+ + +S TP+
Sbjct: 507 TGTPRTVSKSSSKTPSSKVSKEKESPEDSAKVFSRKKKSVTPK 549
>02_05_0591 - 30183105-30183869
Length = 254
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQG 307
QRKT+TA DV++A+ R G
Sbjct: 87 QRKTITAEDVLWAMSRLG 104
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 185 DPRRSQSVPRKRDPRRCHIHRTRQRKTVTAMDVVYALKRQGRTLYG 322
+P + PR+R RR H+ R R+ V ++RQ R G
Sbjct: 559 EPSALTAAPRRRQIRRVHVRIRRARRCQARHAVGELVRRQARHAVG 604
>05_04_0077 -
17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 160 VSPVLYTKRPAAFSKCSSKT*SATLSHTPNTPEEDRHRYGCCVRSETPRSHP 315
+SP++ K + S+C ++T A+++ + P + ++ CC + ET R P
Sbjct: 616 ISPIVVDKSASMPSRCKNETTEASMAVPASEPVD---QWVCCDKCETWRLLP 664
>11_04_0444 + 17816207-17817436
Length = 409
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 128 PSFGSXRWSETYLRSYIXRDPRRSQSVPRKRDPRRCHIHRTRQRKTVTAMDVVYALKR 301
P G+ + SE Y ++ S KR+P++C H ++ VT Y+ R
Sbjct: 182 PIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKAR 239
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 185 DPRRSQSVPRKRDPRRCHIHRTRQRKTVT 271
+PRR Q PR+ PR C R+ + VT
Sbjct: 32 EPRRRQKRPRRSAPRDCPSQRSSAFRGVT 60
>07_03_0999 - 23216665-23217419,23217626-23217956
Length = 361
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 128 PSFGSXRWSETYLRSYIXRDPRRSQSVPRKRDPRRCHIHRTRQRKTVTAMDVVYALKR 301
P G+ + SE Y ++ S KR+P++C H ++ VT Y+ R
Sbjct: 113 PIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKAR 170
>06_03_0334 - 19660526-19661755
Length = 409
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 128 PSFGSXRWSETYLRSYIXRDPRRSQSVPRKRDPRRCHIHRTRQRKTVTAMDVVYALKR 301
P G+ + SE Y ++ S KR+P++C H ++ VT Y+ R
Sbjct: 182 PIKGNDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVKRDVTKFCGFYSKAR 239
>04_04_0206 +
23595268-23595279,23595475-23596317,23597037-23597088,
23597328-23597395,23597482-23597585,23597681-23597768,
23598405-23598722
Length = 494
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 187 PAAFSKCSSKT*SATLSHTPNTPEEDRHRYGCCVRS 294
P S+ +ATL+H NTP D+ + C S
Sbjct: 257 PTEMKHTDSRKSTATLAHVNNTPMTDKSKDSMCSSS 292
>04_03_0320 - 14316934-14318550
Length = 538
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 244 PNTPEEDRHRYGCCVRS 294
P PE D+ R CCVRS
Sbjct: 443 PTFPELDKPRQNCCVRS 459
>01_06_1284 + 35994595-35995074
Length = 159
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 125 YPSF---GSXRWSETYLRSYIXRDPRRSQSVPRKRDPRRCH 238
+PSF G R S T L++ + DP + + +RD R H
Sbjct: 44 FPSFQALGGHRTSHTRLQAKLLSDPAAAAAAAAERDRARVH 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,930,680
Number of Sequences: 37544
Number of extensions: 162501
Number of successful extensions: 510
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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