Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1278
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          104   3e-25
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.66 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.2  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  104 bits (250), Expect = 3e-25
 Identities = 51/57 (89%), Positives = 52/57 (91%)
 Frame = +3

Query: 87  VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
           VL DNIQGITKPAIR LAR GGVKRISGLIY ETRGVLKVFLENVIRDAVTYTEH +
Sbjct: 22  VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTK 78



 Score = 52.8 bits (121), Expect = 1e-09
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
           +RKTVTAMDVVYALK QGRTLYGFGG
Sbjct: 78  KRKTVTAMDVVYALKIQGRTLYGFGG 103


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 208 SSKT*SATLSHTPNTPEEDRHRYGCCVRSETPRSHP 315
           SSK     ++  P TPE + H YG    S    S P
Sbjct: 69  SSKFEEDLMNKLPTTPEYNNHLYGSTPDSRDYFSRP 104


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 136 WLXXVE*NVSPVLYTKRPAAFSKCSSK 216
           WL  +   V+PV+YT     F K   K
Sbjct: 664 WLGYMNSFVNPVIYTVFNPEFRKAFHK 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,901
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)