Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1278
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59970.1 68418.m07521 histone H4 identical to histone H4 from... 109 4e-25
At5g59690.1 68418.m07483 histone H4 identical to histone H4 from... 109 4e-25
At3g53730.1 68416.m05935 histone H4 identical to histone H4 from... 109 4e-25
At3g46320.1 68416.m05015 histone H4 nearly identical to histone ... 109 4e-25
At3g45930.1 68416.m04970 histone H4 identical to histone H4 from... 109 4e-25
At2g28740.1 68415.m03493 histone H4 identical to histone H4 from... 109 4e-25
At1g07820.2 68414.m00848 histone H4 identical to histone H4 from... 109 4e-25
At1g07820.1 68414.m00847 histone H4 identical to histone H4 from... 109 4e-25
At1g07660.1 68414.m00823 histone H4 identical to histone H4 from... 109 4e-25
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 34 0.035
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 34 0.035
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 31 0.32
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 26 7.0
At2g19390.1 68415.m02262 expressed protein 26 7.0
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 26 9.2
At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing ... 26 9.2
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 26 9.2
>At5g59970.1 68418.m07521 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At5g59690.1 68418.m07483 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At3g53730.1 68416.m05935 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At3g46320.1 68416.m05015 histone H4 nearly identical to histone H4
[Arabidopsis thaliana] GI:166740
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At3g45930.1 68416.m04970 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At2g28740.1 68415.m03493 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At1g07820.2 68414.m00848 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At1g07820.1 68414.m00847 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At1g07660.1 68414.m00823 histone H4 identical to histone H4 from
Lycopersicon esculentum GI:297150, Lolium temulentum
SP|P02308, Acropora formosa GI:455652, Citrus jambhiri
GI:16797797
Length = 103
Score = 109 bits (263), Expect = 4e-25
Identities = 53/57 (92%), Positives = 54/57 (94%)
Frame = +3
Query: 87 VLRDNIQGITKPAIRXLARXGGVKRISGLIYXETRGVLKVFLENVIRDAVTYTEHAR 257
VLRDNIQGITKPAIR LAR GGVKRISGLIY ETRGVLK+FLENVIRDAVTYTEHAR
Sbjct: 22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHAR 78
Score = 56.0 bits (129), Expect = 8e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQGRTLYGFGG 331
+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 78 RRKTVTAMDVVYALKRQGRTLYGFGG 103
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.9 bits (74), Expect = 0.035
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 182 RDPRRSQSVPRKRDPRRCHIHRTRQR 259
R PRRS+S PR+R PRR R R R
Sbjct: 125 RSPRRSRSPPRRRSPRRSRSPRRRSR 150
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 33.9 bits (74), Expect = 0.035
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 182 RDPRRSQSVPRKRDPRRCHIHRTRQR 259
R PRRS+S PR+R PRR R R R
Sbjct: 125 RSPRRSRSPPRRRSPRRSRSPRRRSR 150
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 30.7 bits (66), Expect = 0.32
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -3
Query: 337 SLTAETVQGATLAFQSVHNIHSGDGLPLACSVYVT--ASRITFSRNT-LRTPRVSXYIR 170
+LTAE V+GATL +S D + + + R+ +NT L TP VS IR
Sbjct: 46 ALTAEKVKGATLVVSGDGRYYSKDAVQIIIKMAAANGVRRVWVGKNTLLSTPAVSAVIR 104
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQG 307
QRKT+TA DV++A+ + G
Sbjct: 113 QRKTITAEDVLWAMSKLG 130
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 185 DPRRSQSVPRKRDPRRCHIHRTRQRKTVTAMDVVYALKRQGRTLYGFGG*RS 340
D + +Q++PR P + + K ++ ++RQGRT GF RS
Sbjct: 552 DGKAAQNIPRVSIPA---LQSRKSNKPAAGEEIGDGVRRQGRTGRGFSSTRS 600
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 157 NVSPVLYTKRPAAFSKCSSKT*SATLSHTPNTPEEDRHRYG 279
N+ P L K + +CSS + + SH +TP+E R R G
Sbjct: 732 NLRPSLVWK-DGKWIECSSSGETISSSHEGDTPKEKRPRLG 771
>At1g28310.1 68414.m03474 Dof-type zinc finger domain-containing
protein
Length = 311
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 181 KRPAAFSKCSSKT*SATLSHTPNTPEEDRH 270
KRP+ + ++ T S T S +PN P + H
Sbjct: 83 KRPSTATTTTASTVSTTNSSSPNNPHQISH 112
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 254 QRKTVTAMDVVYALKRQG 307
QRKT+TA D+++A+ + G
Sbjct: 114 QRKTITAEDILWAMSKLG 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,033,686
Number of Sequences: 28952
Number of extensions: 124781
Number of successful extensions: 351
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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