Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1276
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 27 2.3
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.3
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 26 3.0
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 4.0
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 5.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.1
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 25 9.1
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 9.1
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 352 SESKTTTEEIPAAETSDEESANXKEP 429
S SKTT EIP + DE + EP
Sbjct: 518 SASKTTDTEIPLVKNEDENARKPTEP 543
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 280 DLDSFKTNSGDIPLQYK-EPPTRYSSESKTTTEEIPAAETSDEESANXKEPTRE 438
+L+S KT K T +S T +EIP ++T DEE + P E
Sbjct: 50 ELESVKTKQISSSASSKVSSNTIQELDSTTDEDEIPGSDTVDEEDPSLNAPFSE 103
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +1
Query: 280 DLDSFKTNSGD----IPLQYKEPPTRYSSESKTTTEEIPAAETSDEESAN 417
D D +T+S D P P ++ S +KTT+++ +A T+DE ++
Sbjct: 584 DYDLLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTTDERPSD 633
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 283 LDSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREGHS 447
LDS K+ + D+P+ T Y++ S T+T P T +E + +E H+
Sbjct: 218 LDSSKSIASDMPIHRASHTTGYAAASLTSTSFTPV--TKNERAIIAEEDYMLNHT 270
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +1
Query: 355 ESKTTTEEIPAAET---SDEESANXKEPTREGHS 447
ES + +E+ +AE+ +DEES++ K ++E H+
Sbjct: 78 ESASENDELESAESEAENDEESSSQKSNSKESHA 111
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Frame = -3
Query: 250 VFFNFFL-----DWWRSYVSTTSA 194
+FFN++L DWW+ Y T SA
Sbjct: 701 LFFNYYLKKIFADWWQKYNFTLSA 724
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 298 TNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEP 429
T S + PL PP R S S + +PAA + S K P
Sbjct: 181 TASANAPLPVP-PPRRVSQNSSYASGSVPAATAASTASPVKKPP 223
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 121 IYRCVFCFTFISDVVVCVGFKRTVMRIVN 35
++RC + +D + +GF+ VMRI+N
Sbjct: 566 LHRCTYLVLDEADRMFDLGFEPQVMRIIN 594
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 374 KKFPQPRPATKNLLXTR 424
K FP P+P T N+L ++
Sbjct: 15 KSFPYPKPGTSNVLDSK 31
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 130 SRPIYRCVFCFTFISDVVVCVGF 62
++P++R VFCFT+ VVV G+
Sbjct: 151 NQPLFREVFCFTY--GVVVLWGY 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,906
Number of Sequences: 5004
Number of extensions: 32089
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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