Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1276
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0889 - 6807449-6809257                                           31   0.75 
08_02_1012 + 23550314-23551504                                         28   5.3  
04_04_0686 - 27249140-27249220,27249387-27249480,27249922-272499...    27   7.0  
03_05_0977 + 29355824-29357056                                         27   7.0  
01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829...    27   7.0  

>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +2

Query: 353 PRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRFVDDXEAARRLMP 514
           P A RLL   P PRPA  N L    PP    +      S   + D     RL+P
Sbjct: 55  PYAARLLAHHPDPRPALLNPLFASLPPRAAASLLALMLSLPLLPDHFTFPRLLP 108


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +2

Query: 335 PRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRFVDDXEAARRLMP 514
           P+RG PPRA +     PQP P  +      +     TAC    N   +    EA   L P
Sbjct: 195 PKRGRPPRAAK-----PQPTPERQQEAEVEAAATFWTACPSCCNLHEYTRSYEARTLLCP 249

Query: 515 T 517
           +
Sbjct: 250 S 250


>04_04_0686 -
           27249140-27249220,27249387-27249480,27249922-27249987,
           27250068-27250158,27250378-27250460,27250565-27250633,
           27250971-27251038,27251118-27251204,27252998-27253069,
           27253469-27253527,27253663-27253780,27254411-27254466,
           27254892-27254937,27255011-27255052,27255837-27255922,
           27256039-27256087
          Length = 388

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 271 ELVDLDSFKTNSGDIPLQYKEPPTRYSSESKTTTEE 378
           ++V +D+F   SG       E P RYS E K + EE
Sbjct: 285 KIVHIDAFTAMSGVSRFCESEYPWRYSKEEKISIEE 320


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 301 NSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEE 408
           N G+I L  K+ PT+  ++S T  E I   E  + E
Sbjct: 61  NQGEIRLGRKDLPTKLEADSSTLDERIEDEENEEME 96


>01_06_1169 -
           35082160-35082292,35082572-35082651,35082727-35082939,
           35083243-35083323,35083381-35083492,35083697-35083786,
           35083986-35084176,35084683-35084762,35085266-35085347,
           35085506-35085590,35086261-35086379
          Length = 421

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 140 WLLFETYLPLCILFYFHFRCG 78
           W++F + LP  I+FYF   CG
Sbjct: 255 WIIFLSKLPEIIVFYFCVSCG 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,634
Number of Sequences: 37544
Number of extensions: 239272
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)