Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1276
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   0.77 
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              30   1.0  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                    29   2.3  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   5.4  
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)                        28   5.4  
SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)                   28   5.4  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                27   9.5  
SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.5  
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               27   9.5  

>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 326 TKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRFVDDXEAARR 505
           ++SPRR    R +R   + P P+P        R PPE +T    E   +R V   + AR 
Sbjct: 100 SRSPRRESIDRKRRSSYESPSPQPFPS---PVRKPPEPMTEESAEEKDQRTVFCMQLARN 156

Query: 506 LMP 514
           + P
Sbjct: 157 IRP 159


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 286 DSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREG-HSLXSGI 462
           DSF T   +I       PTR ++  +TT   I A  T+    A    P R   +S  +G+
Sbjct: 243 DSFTTRYSEISEDQGHKPTRTTTRPRTTPTSITATRTTTRTRATTGSPGRHNIYSSRTGV 302


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 323  NTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEK 439
            N K+ R+ +PP A  L ++  +PR   KN+      P+K
Sbjct: 1204 NVKNTRKLVPPYAISLSRRLVRPRQGKKNVPAEEDVPDK 1242


>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 320

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/75 (25%), Positives = 28/75 (37%)
 Frame = +2

Query: 299 RTLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRF 478
           +T  T   N     R +P  A R    +PQP+P       T + P+K            F
Sbjct: 80  KTGTTPRKNIPDQERSLPIPAPRRNIPYPQPKPIPTPRKNTPNQPQKPIPAPRRNIVSSF 139

Query: 479 VDDXEAARRLMPTTT 523
           +D      + +P TT
Sbjct: 140 IDSGNRLVKAIPQTT 154


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 328 KEPPTRYSSESKTTTEEIPAAETSDEESANXK----EPTREGHSL 450
           ++P  R SSESK T    P  +  +EE A       EP+  GH L
Sbjct: 397 EKPERRTSSESKETRPRSPVEKVKEEEPAKASFRPPEPSDYGHIL 441


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 302 TLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKV 442
           TL+T+      P R +P   K   K++P  RP TK    TR P  K+
Sbjct: 231 TLLTTTARLDEPTR-MPSTTKATTKRYPTKRPTTKR-HSTRLPTRKM 275


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 238 FFLDWWRSYVSTTSATSG 185
           +  DWWR+ + TTSA +G
Sbjct: 566 YVFDWWRTNMPTTSANTG 583


>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
          Length = 184

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 302 TLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPAT 403
           TL T  F+T  PR    P+AKR+ +  P P P T
Sbjct: 113 TLPTPPFSTPRPR----PKAKRIRRLLPTPPPPT 142


>SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)
          Length = 169

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 69  TQTTTSEMKVKQNTQR*IGLEQQPLRRLQRHKTKSCRRQPEVADVVET*LLHQSRKKLKK 248
           T+T ++  K K+  ++   +E+Q        K K  R+  +V DV E       +KK KK
Sbjct: 80  TETPSARKKKKKEKEQEETMEEQQTEATSSAKKKKKRKVEDVEDVEEKVEAETPKKKKKK 139

Query: 249 T 251
           +
Sbjct: 140 S 140


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 295 KTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREGHSL 450
           +T   D+P++ + P T  SSE ++T    P+    +EE A  K  +++   +
Sbjct: 481 ETPMEDVPVERETPGTVTSSEEQSTRS--PSDSRFEEEGAEAKSDSKDNEQV 530


>SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 151 SRRSGCCSRPIYRCVFCF 98
           SRRSG  SR +YRC + F
Sbjct: 28  SRRSGSASRDVYRCKWPF 45


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 172 DFVLCLWSRRSGCC---SRPIYRCVFCFTFISDVVVC 71
           DFV+C  +     C    R IY CV    FI D V+C
Sbjct: 677 DFVICGRAAAVRDCIMRDRAIYNCVMSDRFIRDCVMC 713


>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1291

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 396 GLGCGNFFSSRFALGGIPRRGLFVLKWDVTRVRFEA 289
           G G   F     AL  +P  GL + KWD+TR+ FEA
Sbjct: 783 GYGSRLFVIRECALSALP--GL-LKKWDITRMSFEA 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,923
Number of Sequences: 59808
Number of extensions: 253202
Number of successful extensions: 895
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)