BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1276 (525 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.77 SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4) 30 1.0 SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 29 2.3 SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 5.4 SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 28 5.4 SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4) 28 5.4 SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 27 9.5 SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5 SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 27 9.5 >SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) Length = 514 Score = 30.7 bits (66), Expect = 0.77 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = +2 Query: 326 TKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRFVDDXEAARR 505 ++SPRR R +R + P P+P R PPE +T E +R V + AR Sbjct: 100 SRSPRRESIDRKRRSSYESPSPQPFPS---PVRKPPEPMTEESAEEKDQRTVFCMQLARN 156 Query: 506 LMP 514 + P Sbjct: 157 IRP 159 >SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4) Length = 735 Score = 30.3 bits (65), Expect = 1.0 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = +1 Query: 286 DSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREG-HSLXSGI 462 DSF T +I PTR ++ +TT I A T+ A P R +S +G+ Sbjct: 243 DSFTTRYSEISEDQGHKPTRTTTRPRTTPTSITATRTTTRTRATTGSPGRHNIYSSRTGV 302 >SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1995 Score = 29.5 bits (63), Expect = 1.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 323 NTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEK 439 N K+ R+ +PP A L ++ +PR KN+ P+K Sbjct: 1204 NVKNTRKLVPPYAISLSRRLVRPRQGKKNVPAEEDVPDK 1242 >SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) Length = 320 Score = 29.1 bits (62), Expect = 2.3 Identities = 19/75 (25%), Positives = 28/75 (37%) Frame = +2 Query: 299 RTLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTACXVE*NSKRF 478 +T T N R +P A R +PQP+P T + P+K F Sbjct: 80 KTGTTPRKNIPDQERSLPIPAPRRNIPYPQPKPIPTPRKNTPNQPQKPIPAPRRNIVSSF 139 Query: 479 VDDXEAARRLMPTTT 523 +D + +P TT Sbjct: 140 IDSGNRLVKAIPQTT 154 >SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 767 Score = 28.7 bits (61), Expect = 3.1 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +1 Query: 328 KEPPTRYSSESKTTTEEIPAAETSDEESANXK----EPTREGHSL 450 ++P R SSESK T P + +EE A EP+ GH L Sbjct: 397 EKPERRTSSESKETRPRSPVEKVKEEEPAKASFRPPEPSDYGHIL 441 >SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 442 Score = 28.3 bits (60), Expect = 4.1 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 302 TLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKV 442 TL+T+ P R +P K K++P RP TK TR P K+ Sbjct: 231 TLLTTTARLDEPTR-MPSTTKATTKRYPTKRPTTKR-HSTRLPTRKM 275 >SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) Length = 649 Score = 27.9 bits (59), Expect = 5.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 238 FFLDWWRSYVSTTSATSG 185 + DWWR+ + TTSA +G Sbjct: 566 YVFDWWRTNMPTTSANTG 583 >SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) Length = 184 Score = 27.9 bits (59), Expect = 5.4 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 302 TLVTSHFNTKSPRRGIPPRAKRLLKKFPQPRPAT 403 TL T F+T PR P+AKR+ + P P P T Sbjct: 113 TLPTPPFSTPRPR----PKAKRIRRLLPTPPPPT 142 >SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4) Length = 169 Score = 27.9 bits (59), Expect = 5.4 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 Query: 69 TQTTTSEMKVKQNTQR*IGLEQQPLRRLQRHKTKSCRRQPEVADVVET*LLHQSRKKLKK 248 T+T ++ K K+ ++ +E+Q K K R+ +V DV E +KK KK Sbjct: 80 TETPSARKKKKKEKEQEETMEEQQTEATSSAKKKKKRKVEDVEDVEEKVEAETPKKKKKK 139 Query: 249 T 251 + Sbjct: 140 S 140 >SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) Length = 883 Score = 27.1 bits (57), Expect = 9.5 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +1 Query: 295 KTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREGHSL 450 +T D+P++ + P T SSE ++T P+ +EE A K +++ + Sbjct: 481 ETPMEDVPVERETPGTVTSSEEQSTRS--PSDSRFEEEGAEAKSDSKDNEQV 530 >SB_18799| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 96 Score = 27.1 bits (57), Expect = 9.5 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 151 SRRSGCCSRPIYRCVFCF 98 SRRSG SR +YRC + F Sbjct: 28 SRRSGSASRDVYRCKWPF 45 >SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1200 Score = 27.1 bits (57), Expect = 9.5 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Frame = -3 Query: 172 DFVLCLWSRRSGCC---SRPIYRCVFCFTFISDVVVC 71 DFV+C + C R IY CV FI D V+C Sbjct: 677 DFVICGRAAAVRDCIMRDRAIYNCVMSDRFIRDCVMC 713 >SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) Length = 1291 Score = 27.1 bits (57), Expect = 9.5 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 396 GLGCGNFFSSRFALGGIPRRGLFVLKWDVTRVRFEA 289 G G F AL +P GL + KWD+TR+ FEA Sbjct: 783 GYGSRLFVIRECALSALP--GL-LKKWDITRMSFEA 815 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,087,923 Number of Sequences: 59808 Number of extensions: 253202 Number of successful extensions: 895 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 894 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1184975377 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -