Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1276
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   0.83 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 277 VDLDSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEE 408
           V+++S+     D+ + +KE P R   E++     I   ET+D +
Sbjct: 177 VEIESYGYTVLDVVMYWKETPVRGVEEAELPQFTIIGYETNDRK 220


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 140 WLLFETYLPLCIL 102
           + LF TY+P C++
Sbjct: 246 YYLFHTYIPTCLI 258


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 381 NFFSSRFALGGIPRRGLFVLKWDVTRVRFEAVE 283
           N+ ++  A+  I    L    WD +R+ FEA +
Sbjct: 717 NYDTAEEAIRDIKIGKLMAFIWDSSRLEFEAAQ 749


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,380
Number of Sequences: 438
Number of extensions: 2405
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)