Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1276
(525 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22680.1 68417.m03273 myb family transcription factor (MYB85)... 30 0.83
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 30 1.1
At1g76770.1 68414.m08934 heat shock protein-related contains sim... 29 1.4
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ... 29 1.9
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 29 1.9
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 29 2.5
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 28 4.4
At4g06479.1 68417.m00885 hypothetical protein 27 5.8
At5g42920.2 68418.m05233 expressed protein 27 7.7
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 27 7.7
At3g19170.1 68416.m02434 peptidase M16 family protein / insulina... 27 7.7
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat... 27 7.7
At1g31870.1 68414.m03917 expressed protein 27 7.7
>At4g22680.1 68417.m03273 myb family transcription factor (MYB85)
similar to myb DNA-binding protein GI:1020155 from
[Arabidopsis thaliana]
Length = 266
Score = 30.3 bits (65), Expect = 0.83
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 280 DLDSFKT---NSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKE 426
++D+ KT N D+ ++ K T+Y S TTTEE ++ +D+ S+ E
Sbjct: 135 NIDNSKTIPSNPDDVSVEPKTTNTKYVEISVTTTEEESSSTVTDQNSSMDNE 186
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 316 PLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREG 441
PL + E T ESKT TEE E+ D+ES +E G
Sbjct: 459 PLNFDE--TMIEDESKTQTEEEAEHESDDDESMGGEEEEEAG 498
>At1g76770.1 68414.m08934 heat shock protein-related contains
similarity to 17.9 kDa heat-shock protein [Helianthus
annuus] gi|11990130|emb|CAB55634
Length = 244
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 LDSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETS-DEESANXKEPTRE 438
+ K D + KEP +E KT EE ET +EE+ +EP RE
Sbjct: 132 ITGLKIEEEDEEEEMKEPIVEEKTEEKTEPEEEIKEETKPEEENEEAEEPQRE 184
>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 704
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 14 STTSEPLVHNSHDGPL 61
+TTSEPLVH SH PL
Sbjct: 516 ATTSEPLVHESHRHPL 531
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 313 IPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTREGHS 447
+P QY EP +Y S+++ + S +S++ +PTR S
Sbjct: 321 VPWQYSEPARQYQLSSRSSEAAQLSLLPSVSDSSHASQPTRSNQS 365
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 14 STTSEPLVHNSHDGPL 61
+TTSEPLVH SH PL
Sbjct: 521 ATTSEPLVHESHMHPL 536
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 286 DSFKTNSGDIPLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPT 432
DS TN+ D Y PT ++ ++T IP A+ S + N PT
Sbjct: 208 DSSSTNATDEDQHYYLSPTEDDTDDESTI-SIPVADPSSDICQNNANPT 255
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 41 NSHDGPLKSDTDNHI 85
N+HDGPL S+ NH+
Sbjct: 29 NNHDGPLSSEEANHV 43
>At5g42920.2 68418.m05233 expressed protein
Length = 819
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 316 PLQYKEPPTRYSSESKTTTEEIPAAETSDEESANXKEPTRE 438
P + + P ESKT+ EEI A S ++ N K RE
Sbjct: 30 PREPGKSPLELLRESKTSVEEIVAKMLSMKKQGNHKSEIRE 70
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 172 DFVLCLWSRRSGCCSR 125
D VLC+WSR SG C +
Sbjct: 114 DGVLCVWSRSSGQCRK 129
>At3g19170.1 68416.m02434 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain
Length = 1080
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 250 VFFNFFLDWWRSYVSTTSATSG*R 179
+FF FF + RSY+S TS+T+ R
Sbjct: 16 LFFRFFRQFPRSYMSLTSSTAALR 39
>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 583
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 335 PRRGIPPRAKRLLKKFPQPRPATKNLLXTRSPPEKVTA 448
P PP ++ + P P+P T+N S P+K A
Sbjct: 70 PTPSTPPPPVKMANEEPPPKPITENKEDPNSKPQKKEA 107
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 350 PPRAKRLLKKFPQPRPATKNLLXTRSPPEK 439
PPR ++ P P P K L SPP +
Sbjct: 179 PPRKRKARNDSPSPEPEAKYLSEDLSPPRR 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,878,475
Number of Sequences: 28952
Number of extensions: 184985
Number of successful extensions: 647
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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