BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1275 (470 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 1.1 SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 27 1.9 SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|... 26 3.3 SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 7.7 SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 25 7.7 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 27.5 bits (58), Expect = 1.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 293 THIRTTVTSSRSDQSEREPTLV*FVVSIRKKKIKMHTQQQQQKNVLRKS 439 TH + TSS SD +E E T +++ K+K M + QQ + L ++ Sbjct: 1258 THFELSTTSSTSDSNEIEKTQEKKRLALEKQKKIMQQFRDQQASFLAQN 1306 >SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 322 Score = 26.6 bits (56), Expect = 1.9 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 345 SPLSSDSSCLFVKKKSKCIHNNNNK 419 +PL + SS L++K+K++ NNNK Sbjct: 280 NPLRNKSSALYLKRKAEEESTNNNK 304 >SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|Schizosaccharomyces pombe|chr 3|||Manual Length = 139 Score = 25.8 bits (54), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -1 Query: 155 ELYFEYLQLREC-NIGMYVMFVIYLICLFLLT 63 E + +YL+ E YV F+IY CL +LT Sbjct: 45 EAFLQYLEYMEYWREPEYVKFIIYPTCLHMLT 76 >SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter Str2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 597 Score = 24.6 bits (51), Expect = 7.7 Identities = 11/50 (22%), Positives = 27/50 (54%) Frame = -1 Query: 197 YHVRCTIVLR*FIIELYFEYLQLRECNIGMYVMFVIYLICLFLLTNMFTR 48 + + T +L F+++ + + L ++ MYV+ ++ +I + N +TR Sbjct: 397 FSMTTTAILSGFLMKRFGRFKMLLMISVPMYVLGILGIILFGINDNHYTR 446 >SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 437 Score = 24.6 bits (51), Expect = 7.7 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = -2 Query: 313 HCCANVCARDISVLSIIRCL--VEFEI 239 HC NVCA+DI+ IRC+ V+F++ Sbjct: 7 HC--NVCAQDITRSIHIRCVECVDFDL 31 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,772,640 Number of Sequences: 5004 Number of extensions: 33406 Number of successful extensions: 84 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 84 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 180421690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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