Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1275
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.1  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    26   3.3  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   7.7  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   7.7  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 293  THIRTTVTSSRSDQSEREPTLV*FVVSIRKKKIKMHTQQQQQKNVLRKS 439
            TH   + TSS SD +E E T     +++ K+K  M   + QQ + L ++
Sbjct: 1258 THFELSTTSSTSDSNEIEKTQEKKRLALEKQKKIMQQFRDQQASFLAQN 1306


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 345 SPLSSDSSCLFVKKKSKCIHNNNNK 419
           +PL + SS L++K+K++    NNNK
Sbjct: 280 NPLRNKSSALYLKRKAEEESTNNNK 304


>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 155 ELYFEYLQLREC-NIGMYVMFVIYLICLFLLT 63
           E + +YL+  E      YV F+IY  CL +LT
Sbjct: 45  EAFLQYLEYMEYWREPEYVKFIIYPTCLHMLT 76


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = -1

Query: 197 YHVRCTIVLR*FIIELYFEYLQLRECNIGMYVMFVIYLICLFLLTNMFTR 48
           + +  T +L  F+++ +  +  L   ++ MYV+ ++ +I   +  N +TR
Sbjct: 397 FSMTTTAILSGFLMKRFGRFKMLLMISVPMYVLGILGIILFGINDNHYTR 446


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -2

Query: 313 HCCANVCARDISVLSIIRCL--VEFEI 239
           HC  NVCA+DI+    IRC+  V+F++
Sbjct: 7   HC--NVCAQDITRSIHIRCVECVDFDL 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,640
Number of Sequences: 5004
Number of extensions: 33406
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)