Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1275
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.84 
SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  

>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = +3

Query: 150 KLNDKLSQNNSATNMIT*RVD-RHALY------HLVLISNSTKHLIILNTDISRAHTFAQ 308
           ++   +S N    + ++   D RHA++      H   ++   +H + +N DI  A++  Q
Sbjct: 113 EIRHAVSVNQDIRHAVSVNQDIRHAVFVNQDSRHACSVNQDIRHAVSVNKDIRHAYSVNQ 172

Query: 309 Q*RHRVPTNQN 341
             RH V  NQ+
Sbjct: 173 DIRHAVSVNQD 183



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 HLVLISNSTKHLIILNTDISRAHTFAQQ*RHRVPTNQN 341
           H V ++   +H + +N DI  A +  Q  RH V  NQ+
Sbjct: 106 HAVFVNQEIRHAVSVNQDIRHAVSVNQDIRHAVFVNQD 143



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 ISNSTKHLIILNTDISRAHTFAQQ*RHRVPTNQN 341
           ++   +H + +N DI  A +  Q  RH V  NQN
Sbjct: 230 VNQDIRHAVSINQDICHAGSVNQDIRHAVFVNQN 263



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 228 HLVLISNSTKHLIILNTDISRAHTFAQQ*RHRVPTNQN 341
           H   ++   +H + +N DI  A +  Q  RH +  NQ+
Sbjct: 166 HAYSVNQDIRHAVSVNQDIHHACSVNQDIRHAISVNQD 203


>SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 339 NESPLSSDSSCLFVKKKSKCIHNNNNKKMC 428
           NE P+S DS    +KK+SK      NKK C
Sbjct: 174 NEMPISGDS----IKKQSKVRSKRRNKKSC 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,932
Number of Sequences: 59808
Number of extensions: 255614
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)