Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1275
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    29   2.2  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   3.9  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    27   6.8  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   6.8  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    27   6.8  
X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    27   9.0  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 134 QLRECNIGMYVMFVIYLICLFLLTNMFTRTEYSASH 27
           +L  C + +  +F +Y+ C  + T+   R EY+ SH
Sbjct: 3   RLNMCQLYLLHLFFLYVCCWIVGTSALGRAEYTCSH 38


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 218 MAVYTLSYHVRCTIVLR*FIIELYFEYLQLRECNIGMYVMFVIYLICLFLLTNMFTRTE 42
           M  +   Y++ C IV       LY  +L  R+ N+G      I LI L +  N+ T  E
Sbjct: 211 MQNFDYGYNMTCCIVFSLITTCLYVHHLYYRKRNLGSLQESDIVLIRLIIWANLSTALE 269


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 170 SEQ*CNEHDNLTCRPPC 220
           S Q CN+H NL C+P C
Sbjct: 196 SVQQCNQHCNLECQPTC 212


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 362 IRREWALVLIGRNAMTSLLCECVCARY 282
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 478 VPKDMLMKLIQKNSRSTCTCSCMCGRY 504


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 362 IRREWALVLIGRNAMTSLLCECVCARY 282
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 441 VPKDMLMKLIQKNSRSTCTCSCMCGRY 467


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 354 RVGSRSDWSERDDVTVVRMC 295
           +VG RSDW E   + VV MC
Sbjct: 651 KVGLRSDWFEHQAMPVVDMC 670


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 362 IRREWALVLIGRNAMTSLLCECVCARY 282
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 478 VPKDMLMKLIQKNSRSTCTCSCMCGRY 504


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 362 IRREWALVLIGRNAMTSLLCECVCARY 282
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 180 VPKDMLMKLIQKNSRSTCTCSCMCGRY 206


>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 266 YTQYGYIARTHIRTTVTSSR 325
           Y  +G   R+HI+TTV SSR
Sbjct: 524 YNSHGIEKRSHIQTTVASSR 543


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 336  QNESPLSSDSSCLFVKKKSKCIHNNNNKKMCYANRVRHC 452
            + ++P S  + C   +KK    ++ N+K M    R+R C
Sbjct: 1043 EGDTPFSQRAECPIEEKKQTAKYDENDKFMFPLGRLRFC 1081


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,682,092
Number of Sequences: 27780
Number of extensions: 186715
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)