Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1275
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36180.1 68417.m05148 leucine-rich repeat family protein cont...    27   4.8  
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ...    27   8.5  
At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.5  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    27   8.5  

>At4g36180.1 68417.m05148 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 1136

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 302 RTTVTSSRSDQSEREPTLV*FVVSIRKKKIKMHTQQQQQKNVLRKSRKTLL 454
           R   ++SRS     EP LV F   I   +    T+Q  ++NVL ++R  LL
Sbjct: 805 RVRSSTSRSSTENGEPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLL 855


>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1069

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 188 RCTIVLR*FIIELYFEYLQLRECNIGMYVMFVIYLIC 78
           R  IVLR  I+ L+F Y  L   N   Y +++I +IC
Sbjct: 264 RMLIVLRLVILGLFFHYRILHPVN-DAYALWLISVIC 299


>At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 487

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 251 D*TSNYTQYGYIARTHIRTTVTSSRSDQSE 340
           D T +Y   G+++RTH R  + SS + Q+E
Sbjct: 326 DGTPDYLPEGFVSRTHERGFMVSSWAPQAE 355


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 116 IGMYVMFVIYLICLF 72
           +G YV F+ +L+CLF
Sbjct: 4   LGFYVTFIFFLVCLF 18


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,784,167
Number of Sequences: 28952
Number of extensions: 160441
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)