Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1274
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    27   3.4  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    26   5.9  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   7.8  

>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 611 DEKSSDQRRPVTNDTNKQLYYDT*KCWKC 525
           DE S D R+P++ D N++   +  + +KC
Sbjct: 145 DEDSFDMRKPLSRDVNRESIRENGENFKC 173


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 537 FLSVIIKLFISIIRHRSSLVTALLINVCYI 626
           FL + I  F  I+ + SSL+  L +++C+I
Sbjct: 66  FLFIAIPYFTEILYNDSSLLWFLFVSLCFI 95


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 581 PVVAGHCSSHQRMLHPGPHFHNQN 652
           PV+  HC  H +ML P    + +N
Sbjct: 32  PVILTHCKLHSKMLEPKAIVYKKN 55


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 429 RKHEH*QSMRVGEWFSSCLKKAANLKNGSCRR 334
           RK+ H Q +R  +     L+ A   KN SC+R
Sbjct: 27  RKYRHRQRLRAVDEVVDVLRTALQEKNQSCKR 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,563
Number of Sequences: 5004
Number of extensions: 46318
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)