Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1274
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734...    29   4.7  
03_02_0037 - 5192935-5192970,5193057-5193140,5193261-5193371,519...    28   6.2  
06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501           28   8.1  
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509...    28   8.1  

>11_06_0685 -
           26272928-26273110,26273186-26273257,26273339-26273425,
           26273566-26273655,26273741-26273785,26273872-26274054,
           26274333-26274392,26274521-26274703,26274779-26274907,
           26275083-26275380,26275454-26275608,26275791-26275929,
           26276015-26276096,26276167-26276285,26276367-26276494,
           26276640-26276813,26276882-26277028
          Length = 757

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 462 KKKSNKYIINFRKHEH*QSMRVGEWFSSCLKKAANLKNGSC 340
           K+ S K+II+  + EH  + +V E  +SC     ++  G C
Sbjct: 685 KRPSRKFIISDSEDEHSSNTKVTEDSTSCNSSKEDINKGRC 725


>03_02_0037 -
           5192935-5192970,5193057-5193140,5193261-5193371,
           5193460-5193834
          Length = 201

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 278 SNYVDDRSSYSSDTGGAH*RRQLPFF 355
           + Y+DD SSYS  T   H + Q P++
Sbjct: 17  TTYLDDHSSYSCGTARFHGKAQQPYY 42


>06_01_0477 + 3404648-3404657,3405385-3405461,3405638-3406501
          Length = 316

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 543 LKMLEVYVRLCVIIMLIFSVYKKVIRFKKKSNKYIINFRKHEH*QSMRVG 394
           L  L+ ++R C++ +L +    K I F    N+    FR  +     RVG
Sbjct: 45  LASLQNFIRKCIVAVLSYGPMPKHIAFIMDGNRRYAKFRSIQEGSGHRVG 94


>03_06_0643 +
           35248597-35250585,35250663-35250773,35250867-35250971,
           35252215-35252304
          Length = 764

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 456 KSNKYIINFRKHEH*QSMRVGEWFSSCLKKAANLKNGSCRR 334
           KS + ++NF K     ++R G  F  C+KK++  K G CRR
Sbjct: 16  KSYEEVLNFYKR---YALRTG--FGVCVKKSSFTKAGLCRR 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,483
Number of Sequences: 37544
Number of extensions: 273127
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)