Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1274
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   7.3  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -2

Query: 534 LEVYVRLCVIIMLIFSVYKKVIRFKKKS 451
           L+++  LC+I +L F VY+K+  FK+KS
Sbjct: 496 LDLFFYLCIISLLNFVVYRKI--FKRKS 521


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +3

Query: 492  ILAL*SHIILHTLPTFLSVIIKLFISIIRHRSSLVTALLINV 617
            +LAL + +++  +   + V++KL++ +++   SL  +LLI +
Sbjct: 1027 LLALITVLVVVAIAVLVLVLVKLYLRVVKGNQSLGISLLIGI 1068


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +3

Query: 492  ILAL*SHIILHTLPTFLSVIIKLFISIIRHRSSLVTALLINV 617
            +LAL + +++  +   + V++KL++ +++   SL  +LLI +
Sbjct: 1027 LLALITVLVVVAIAVLVLVLVKLYLRVVKGNQSLGISLLIGI 1068


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,025,115
Number of Sequences: 27780
Number of extensions: 263109
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)