Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1273
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720...    50   1e-06
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371...    49   4e-06
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570...    31   1.2  
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    29   3.6  

>02_05_0855 -
           32271631-32271712,32271823-32271922,32272012-32272072,
           32272169-32272294
          Length = 122

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLT 382
           K   TF+ +D+D   + SGKLNPQ AF  GK+KI+G++  A K T
Sbjct: 68  KPDATFSFTDDDFLAISSGKLNPQMAFIMGKLKIKGSISAAQKFT 112


>01_03_0268 +
           14436631-14436756,14436866-14436929,14437001-14437100,
           14437187-14437478
          Length = 193

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLT 382
           K   TF+ +D+D   + SGKLNPQ  F  GK+KI+G++  A K T
Sbjct: 69  KPDATFSFTDDDFLAISSGKLNPQMVFIMGKLKIKGSISAAQKFT 113


>06_01_0762 +
           5699619-5699744,5699831-5699891,5699979-5700078,
           5700436-5700560,5700631-5700706,5701122-5701164
          Length = 176

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQ 430
           K   TF+ +D D   + +GK+NPQ AF +
Sbjct: 68  KPDATFSFTDSDFLSIATGKMNPQIAFIR 96


>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
            8332461-8332619,8333246-8333372,8333444-8333775,
            8333859-8334593,8334735-8335073,8335160-8335313,
            8335405-8336154,8336242-8336372
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 692  SSKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 576
            +++Y K L E++ +     + KV G+Y    RN  DG E
Sbjct: 1365 AAEYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,933
Number of Sequences: 37544
Number of extensions: 320929
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)