Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1273
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36) 56 2e-08
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 52 6e-07
SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011) 49 4e-06
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0) 30 2.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 6.5
SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1) 28 6.5
SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1) 28 6.5
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 28 6.5
>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
Length = 330
Score = 56.4 bits (130), Expect = 2e-08
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = -2
Query: 671 LEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEK 513
+E+ ++ D ++KV+G+Y FK++ GP G EG WV++ K G G V + ++K
Sbjct: 180 IEKQIKKDGAKFVKKVKGVYCFKIQGGPGGKEGVWVVDVKSGNGSVKFGANDK 232
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 516 KTRVTFTISDEDVADLISGKLNPQ 445
K T T+ D D L++GKLNPQ
Sbjct: 232 KADCTITMKDNDFIQLMAGKLNPQ 255
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = -1
Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAA 361
K T T DED+ + +GK NPQ+ F +GK+K+ GN+ L MKL L + A
Sbjct: 664 KPDTTITCEDEDLISMATGKANPQQLFMKGKLKVAGNIMLTMKLNQLFKDYA 715
>SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)
Length = 66
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = -1
Query: 498 TISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAAGRI 352
T+ ED + G+LNP +AF GK+KI+G+M +AMKL L +Q ++
Sbjct: 18 TLDAEDFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQLKSKL 66
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 48.0 bits (109), Expect = 8e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = -1
Query: 498 TISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 367
T+ ED + G+LNP +AF GK+KI+G+M +AMKL L +Q
Sbjct: 223 TLDAEDFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMKQ 266
>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 667 KRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKK 548
K P P R++ S+ S+ S SE QT RV S+ +KK
Sbjct: 291 KEPSSPARSSVESNSSSSSTSSSEKGQTEIRVHDSAEQKK 330
>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
Length = 459
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -3
Query: 562 SMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRETEPSEGVLPRKDQDPGQHGAGYE 389
S R + + S TA K+P+D H R +P + D D G H +G+E
Sbjct: 17 SSRLQTRAVSRLTAAKDPKDQHKLRDTRQRRLPPRPQPIKPASKDSDDDTGSHTSGHE 74
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -3
Query: 697 KGLPNT*RSLKRPCKP--TRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTT 524
K LP++ ++K P T+ SR+S +VS+S + + + SS +++ +SP
Sbjct: 1088 KALPDSKPAVKSSPSPPPTKPRPSRRSLSKSVSKSPSPARKGKRSSSSSSSRSRSRSPRR 1147
Query: 523 ALKNP 509
++P
Sbjct: 1148 RKRSP 1152
>SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)
Length = 175
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 631 RKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSP-TTALKNPR 506
RK G +SR+ T P++ +K K K P TA+K P+
Sbjct: 121 RKDYGWEISRAFTFSYFPKLAEQPQKKTKKPKKPGLTAIKKPK 163
>SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)
Length = 166
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 631 RKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSP-TTALKNPR 506
RK G +SR+ T P++ +K K K P TA+K P+
Sbjct: 121 RKDYGWEISRAFTFSYFPKLAEQPQKKTKKPKKPGLTAIKKPK 163
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Frame = -3
Query: 619 GSTVSRSETVQ--TAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIR-ETEP 449
GS++ ++T T+P+ T + R + PTTA P Q + + E +P
Sbjct: 10 GSSLRSNKTPSKATSPKPTAPATRPTSTSTKPTTASTKPTSPPSQAARTRNTAEKPEEKP 69
Query: 448 --SEGVLPRKDQDPGQHGAGYEAD*FAASSRRQDRDDPI 338
S P PGQ G + + F S D DDP+
Sbjct: 70 ASSGAASPIPASKPGQPGKKFNINKF--DSLGFDEDDPL 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,657,433
Number of Sequences: 59808
Number of extensions: 358459
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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