BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1273 (711 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,... 54 1e-07 Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical p... 45 6e-05 U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases... 42 4e-04 Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 35 0.050 Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 29 3.3 U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.3 U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.3 AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.3 AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.3 AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.3 Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical pr... 28 5.7 >U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases, short chain protein28 protein. Length = 436 Score = 53.6 bits (123), Expect = 1e-07 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = -1 Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQA 364 K T T++D D D+ +GKLN QKAF GK+K++GN+ L KL + +A Sbjct: 381 KANATVTVADSDFVDIAAGKLNAQKAFMSGKLKVKGNVMLLQKLQTVLEKA 431 >Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical protein ZK892.2 protein. Length = 118 Score = 44.8 bits (101), Expect = 6e-05 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = -1 Query: 507 VTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 385 + I D D + +GK+ P +AF QGK+K++GN+ AMKL Sbjct: 65 IEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105 >U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases, short chain protein6 protein. Length = 418 Score = 41.9 bits (94), Expect = 4e-04 Identities = 22/50 (44%), Positives = 29/50 (58%) Frame = -1 Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 367 K V FT++ E A L +GKL P A K++I G+M AMKL L R+ Sbjct: 363 KADVKFTLAPEHFAPLFTGKLRPTTALMTKKLQISGDMPGAMKLESLLRK 412 >Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical protein T03D8.6 protein. Length = 578 Score = 35.1 bits (77), Expect = 0.050 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 Query: 614 YGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPA 507 YGFK P GYW I K G GKVT+ +P+ Sbjct: 125 YGFKAAGTPGEIAGYWHIFKKFGSGKVTWKELVQPS 160 >Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical protein R05D11.8 protein. Length = 566 Score = 29.1 bits (62), Expect = 3.3 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Frame = -3 Query: 631 RKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRETE 452 +KSA STVS + T ++ S R ++ SP + K R + + + Sbjct: 92 KKSAESTVSSTSTASSSASSVPDSSRNRSVAVSPQKSAKG-RSPKKFATNVEKLFEHHST 150 Query: 451 PSEGVLPRKD--QDPGQHGAGYEAD*FAASSRRQDRD 347 PS+ L +K Q P +G + A+ +A+ Q D Sbjct: 151 PSKLTLAKKQSRQSPMHNGFSHTAEEISATPHFQSFD 187 >U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein K06A9.1b protein. Length = 2232 Score = 29.1 bits (62), Expect = 3.3 Identities = 22/77 (28%), Positives = 32/77 (41%) Frame = -3 Query: 634 SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRET 455 S + GST+S S T + TGS++ G + T +PR L S + T Sbjct: 1931 SSGTVGSTISESSTAASTSSQTGSTV---TIGSTSGTNPSSPRSLSQITITPSPS--QST 1985 Query: 454 EPSEGVLPRKDQDPGQH 404 E ++ LP P H Sbjct: 1986 ESTQTSLPSSSPSPSTH 2002 >U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. Length = 6632 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3 Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494 T KS S + ++ + + TG +++K+ KSPT K+P D Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479 >AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated protein 89, isoform a protein. Length = 6632 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3 Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494 T KS S + ++ + + TG +++K+ KSPT K+P D Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479 >AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated protein 89, isoform g protein. Length = 7122 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3 Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494 T KS S + ++ + + TG +++K+ KSPT K+P D Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479 >AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated protein 89, isoform b protein. Length = 8081 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3 Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494 T KS S + ++ + + TG +++K+ KSPT K+P D Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479 >Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical protein ZK1307.7 protein. Length = 436 Score = 28.3 bits (60), Expect = 5.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 108 ISICFNKCLLITLLSFQRYIYINEMYIIILLLNDFF 1 IS+CFN L + L R+ + + +Y++ L + D F Sbjct: 55 ISVCFNTFLFVVLCRNPRHRHSHLVYLMFLSVADIF 90 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,651,015 Number of Sequences: 27780 Number of extensions: 282147 Number of successful extensions: 850 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 850 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1655655746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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