Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1273
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,... 54 1e-07
Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical p... 45 6e-05
U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases... 42 4e-04
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 35 0.050
Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.3
Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical pr... 28 5.7
>U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,
short chain protein28 protein.
Length = 436
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -1
Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQA 364
K T T++D D D+ +GKLN QKAF GK+K++GN+ L KL + +A
Sbjct: 381 KANATVTVADSDFVDIAAGKLNAQKAFMSGKLKVKGNVMLLQKLQTVLEKA 431
>Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical
protein ZK892.2 protein.
Length = 118
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -1
Query: 507 VTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 385
+ I D D + +GK+ P +AF QGK+K++GN+ AMKL
Sbjct: 65 IEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105
>U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases,
short chain protein6 protein.
Length = 418
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = -1
Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 367
K V FT++ E A L +GKL P A K++I G+M AMKL L R+
Sbjct: 363 KADVKFTLAPEHFAPLFTGKLRPTTALMTKKLQISGDMPGAMKLESLLRK 412
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 614 YGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPA 507
YGFK P GYW I K G GKVT+ +P+
Sbjct: 125 YGFKAAGTPGEIAGYWHIFKKFGSGKVTWKELVQPS 160
>Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical
protein R05D11.8 protein.
Length = 566
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = -3
Query: 631 RKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRETE 452
+KSA STVS + T ++ S R ++ SP + K R + + +
Sbjct: 92 KKSAESTVSSTSTASSSASSVPDSSRNRSVAVSPQKSAKG-RSPKKFATNVEKLFEHHST 150
Query: 451 PSEGVLPRKD--QDPGQHGAGYEAD*FAASSRRQDRD 347
PS+ L +K Q P +G + A+ +A+ Q D
Sbjct: 151 PSKLTLAKKQSRQSPMHNGFSHTAEEISATPHFQSFD 187
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 634 SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRET 455
S + GST+S S T + TGS++ G + T +PR L S + T
Sbjct: 1931 SSGTVGSTISESSTAASTSSQTGSTV---TIGSTSGTNPSSPRSLSQITITPSPS--QST 1985
Query: 454 EPSEGVLPRKDQDPGQH 404
E ++ LP P H
Sbjct: 1986 ESTQTSLPSSSPSPSTH 2002
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
T KS S + ++ + + TG +++K+ KSPT K+P D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
T KS S + ++ + + TG +++K+ KSPT K+P D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
T KS S + ++ + + TG +++K+ KSPT K+P D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 640 T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
T KS S + ++ + + TG +++K+ KSPT K+P D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479
>Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical
protein ZK1307.7 protein.
Length = 436
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 108 ISICFNKCLLITLLSFQRYIYINEMYIIILLLNDFF 1
IS+CFN L + L R+ + + +Y++ L + D F
Sbjct: 55 ISVCFNTFLFVVLCRNPRHRHSHLVYLMFLSVADIF 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,015
Number of Sequences: 27780
Number of extensions: 282147
Number of successful extensions: 850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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