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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1273
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,...    54   1e-07
Z48638-10|CAA88566.1|  118|Caenorhabditis elegans Hypothetical p...    45   6e-05
U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases...    42   4e-04
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    35   0.050
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   3.3  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   3.3  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   3.3  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   3.3  
Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,
           short chain protein28 protein.
          Length = 436

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQA 364
           K   T T++D D  D+ +GKLN QKAF  GK+K++GN+ L  KL  +  +A
Sbjct: 381 KANATVTVADSDFVDIAAGKLNAQKAFMSGKLKVKGNVMLLQKLQTVLEKA 431


>Z48638-10|CAA88566.1|  118|Caenorhabditis elegans Hypothetical
           protein ZK892.2 protein.
          Length = 118

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -1

Query: 507 VTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 385
           +   I D D   + +GK+ P +AF QGK+K++GN+  AMKL
Sbjct: 65  IEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105


>U28739-13|AAK68187.1|  418|Caenorhabditis elegans Dehydrogenases,
           short chain protein6 protein.
          Length = 418

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 367
           K  V FT++ E  A L +GKL P  A    K++I G+M  AMKL  L R+
Sbjct: 363 KADVKFTLAPEHFAPLFTGKLRPTTALMTKKLQISGDMPGAMKLESLLRK 412


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 614 YGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPA 507
           YGFK    P    GYW I  K G GKVT+    +P+
Sbjct: 125 YGFKAAGTPGEIAGYWHIFKKFGSGKVTWKELVQPS 160


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = -3

Query: 631 RKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRETE 452
           +KSA STVS + T  ++      S R ++   SP  + K  R          + +   + 
Sbjct: 92  KKSAESTVSSTSTASSSASSVPDSSRNRSVAVSPQKSAKG-RSPKKFATNVEKLFEHHST 150

Query: 451 PSEGVLPRKD--QDPGQHGAGYEAD*FAASSRRQDRD 347
           PS+  L +K   Q P  +G  + A+  +A+   Q  D
Sbjct: 151 PSKLTLAKKQSRQSPMHNGFSHTAEEISATPHFQSFD 187


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -3

Query: 634  SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHDQXXXXXRSYIRET 455
            S  + GST+S S T  +    TGS++     G +  T   +PR L         S  + T
Sbjct: 1931 SSGTVGSTISESSTAASTSSQTGSTV---TIGSTSGTNPSSPRSLSQITITPSPS--QST 1985

Query: 454  EPSEGVLPRKDQDPGQH 404
            E ++  LP     P  H
Sbjct: 1986 ESTQTSLPSSSPSPSTH 2002


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 640  T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
            T   KS  S   + ++  +  + TG  +++K+  KSPT   K+P    D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 640  T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
            T   KS  S   + ++  +  + TG  +++K+  KSPT   K+P    D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 640  T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
            T   KS  S   + ++  +  + TG  +++K+  KSPT   K+P    D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 640  T*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
            T   KS  S   + ++  +  + TG  +++K+  KSPT   K+P    D
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPPKSPTKKEKSPEKPED 1479


>Z47358-9|CAA87434.3|  436|Caenorhabditis elegans Hypothetical
           protein ZK1307.7 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 108 ISICFNKCLLITLLSFQRYIYINEMYIIILLLNDFF 1
           IS+CFN  L + L    R+ + + +Y++ L + D F
Sbjct: 55  ISVCFNTFLFVVLCRNPRHRHSHLVYLMFLSVADIF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,015
Number of Sequences: 27780
Number of extensions: 282147
Number of successful extensions: 850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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