Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1273
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family...    47   1e-05
At1g67160.1 68414.m07640 F-box family protein similar to F-box p...    29   2.3  
At5g66040.1 68418.m08316 senescence-associated family protein al...    29   4.0  
At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase famil...    28   5.3  
At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr...    28   7.0  
At3g09000.1 68416.m01053 proline-rich family protein                   27   9.3  

>At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family
           protein similar to sterol carrier protein-2 [Homo
           sapiens] GI:432973; contains Pfam profile PF02036: SCP-2
           sterol transfer family
          Length = 123

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = -1

Query: 516 KTRVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLT 382
           K   TF+  D+D   + +GK+NPQ AF +G +KI+G++  A K T
Sbjct: 69  KVDATFSFKDDDFVKVATGKMNPQMAFIRGAMKIKGSLSAAQKFT 113


>At1g67160.1 68414.m07640 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 450

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 377 KSVSFIASPMLPWILIFPWKN 439
           KSV  + +P  PWI++FP KN
Sbjct: 49  KSVIGVTNPTTPWIILFPNKN 69


>At5g66040.1 68418.m08316 senescence-associated family protein
           almost identical to ketoconazole resistant protein
           GI:928938 from [Arabidopsis thaliana]  full-length cDNA:
           Ceres:101608.
          Length = 120

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 234 EYKMPSTSSVTFPYNYLVAGTRPTQIRGPTPFT 332
           E ++PS+ SVT  ++ L+AG R   +R P  F+
Sbjct: 4   ESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFS 36


>At1g52500.2 68414.m05927 formamidopyrimidine-DNA glycolase family
           protein / mutM, putative (MMH-1) identical to mutM
           homologue-2 [Arabidopsis thaliana] GP:3550983
           PMID:9819050; contains Pfam profile PF01149:
           Formamidopyrimidine-DNA glycosylase
          Length = 390

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -3

Query: 667 KRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKAKGKSPTTALKNPR 506
           K+P   T+T  S      + +  E V+   R T  ++++K++ K+ + A K P+
Sbjct: 333 KKPASKTKTEESDDDGDDSEAEEEVVKPKGRGTKPAIKRKSEEKATSQAGKKPK 386


>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; expression
           supported by MPSS
          Length = 1073

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 634 SRKSAGSTVSRSETVQT--APRVTGSSMRKKAKGKSPTTALKNPRDLHD 494
           S++  G   S SE +Q   + RVTG   R+ +KG         PR L D
Sbjct: 61  SKEKHGIKHSESEHLQDDISQRVTGKGRRRNSKGTPKKLRFNRPRILED 109


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 676 RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK-KAKGKSPTTALKNPR 506
           + + RP  PTR   +        S++ +  T+P  T +S+ K  ++G SP+  L + R
Sbjct: 236 KPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSPSPTVNSLSKAPSRGTSPSPTLNSSR 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,914
Number of Sequences: 28952
Number of extensions: 262158
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)