Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1272
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    28   1.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   6.0  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   7.9  

>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 696 YHN--ILIYIPITRKRHLMFYHTNIFS 622
           YHN  +L+  P  + RHLM  H  IFS
Sbjct: 98  YHNGTVLVQCPKCKNRHLMADHLKIFS 124


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 675 IPITRKRHLMFYHTNIFSWRDSKPATPLCS 586
           IPI        Y T+ +  R+SKPATP  S
Sbjct: 531 IPILEDPMSTLYDTSRYPTRNSKPATPKAS 560


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 31   KSYVNGRDSASEKLFNKCDRNGITAALVPTLVSKDVKRFQGIHMRSSELPRSETALSVRP 210
            K  ++   S+ + + NK D + I  A        +  + +G HM+ S+ P+S+ AL+   
Sbjct: 1872 KPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKG-HMKKSKKPKSKLALAAMA 1930

Query: 211  H 213
            H
Sbjct: 1931 H 1931


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 332 RNKLCFPILIGQNGESVLVERF 267
           +N+LCFPI  G+ G  V  + F
Sbjct: 326 KNELCFPIPSGKKGAPVFRKHF 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,740
Number of Sequences: 5004
Number of extensions: 55210
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)