Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1272
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)              29   2.7  
SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)                28   6.3  

>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
          Length = 549

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 241 STITSHILWNLSTKTLSPFCPIKMGKHNLFLNISHS 348
           S I++H+L N        +CP   G+HN++++IS S
Sbjct: 427 SVISAHVLDNKDGTYTVFYCPRTPGEHNVYVSISGS 462


>SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
          Length = 290

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 678 YIPITRKRHLMFYHTNIFSWRDSKP--ATPLCSDHVTYHYTRRPLKLMLHSI 529
           Y P T K         + SWR  K     P+C+D +  H  R  ++ ++H+I
Sbjct: 239 YDPETGKSFEELLCKALLSWRHEKENRGLPMCNDSLEAHQPRWTVQYLIHTI 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,250,603
Number of Sequences: 59808
Number of extensions: 415070
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)