Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1272
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine r...    29   4.2  
U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine r...    29   4.2  
AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine...    29   4.2  
AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   9.8  

>U88177-6|AAB42293.1|  446|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform a protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  KWYYSCPSPYPSLQGCKTLPRNP 158
           K+Y  CP+PYP +     + RNP
Sbjct: 223 KYYDCCPNPYPDISYFFAIKRNP 245


>U88177-5|AAT48618.1|  515|Caenorhabditis elegans Acetylcholine
           receptor protein17, isoform b protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  KWYYSCPSPYPSLQGCKTLPRNP 158
           K+Y  CP+PYP +     + RNP
Sbjct: 223 KYYDCCPNPYPDISYFFAIKRNP 245


>AY523512-1|AAR98634.1|  499|Caenorhabditis elegans acetylcholine
           receptor, nicotinic,alpha 9 like (58.1 kD) alternative
           variant a protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 90  KWYYSCPSPYPSLQGCKTLPRNP 158
           K+Y  CP+PYP +     + RNP
Sbjct: 207 KYYDCCPNPYPDISYFFAIKRNP 229


>AC024824-3|AAK85501.1|  543|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.1 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 176 SSLERMWIPWKRFTSLETRVGTRAAVIP 93
           S+  + W P KRF+S+ET  GT    +P
Sbjct: 98  SAFLKPWSPRKRFSSVETNPGTPRIYLP 125


>AC024824-6|AAK85504.2|  567|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.4 protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 67  KLFNKCDRNGITAALVPTLVSKDVKRFQGIH 159
           KL +KCD   IT  L+P  +++ +K+ +  H
Sbjct: 192 KLLDKCDNGIITFKLIPAEINQKLKQKKSSH 222


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 79   KCDRNGITAALVPTLVSKDVKRFQGIHMRSSELPRSET 192
            K D + +  AL+P  V++D  RF  +H+ S E    +T
Sbjct: 8258 KIDFDDLGEALLPLTVAEDELRFMHVHVESIERQYEDT 8295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,458
Number of Sequences: 27780
Number of extensions: 313294
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)