BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1272 (698 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine r... 29 4.2 U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine r... 29 4.2 AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine... 29 4.2 AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 5.6 AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical ... 27 9.8 AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 9.8 >U88177-6|AAB42293.1| 446|Caenorhabditis elegans Acetylcholine receptor protein17, isoform a protein. Length = 446 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 90 KWYYSCPSPYPSLQGCKTLPRNP 158 K+Y CP+PYP + + RNP Sbjct: 223 KYYDCCPNPYPDISYFFAIKRNP 245 >U88177-5|AAT48618.1| 515|Caenorhabditis elegans Acetylcholine receptor protein17, isoform b protein. Length = 515 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 90 KWYYSCPSPYPSLQGCKTLPRNP 158 K+Y CP+PYP + + RNP Sbjct: 223 KYYDCCPNPYPDISYFFAIKRNP 245 >AY523512-1|AAR98634.1| 499|Caenorhabditis elegans acetylcholine receptor, nicotinic,alpha 9 like (58.1 kD) alternative variant a protein. Length = 499 Score = 28.7 bits (61), Expect = 4.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 90 KWYYSCPSPYPSLQGCKTLPRNP 158 K+Y CP+PYP + + RNP Sbjct: 207 KYYDCCPNPYPDISYFFAIKRNP 229 >AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical protein Y55B1BR.1 protein. Length = 543 Score = 28.3 bits (60), Expect = 5.6 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 176 SSLERMWIPWKRFTSLETRVGTRAAVIP 93 S+ + W P KRF+S+ET GT +P Sbjct: 98 SAFLKPWSPRKRFSSVETNPGTPRIYLP 125 >AC024824-6|AAK85504.2| 567|Caenorhabditis elegans Hypothetical protein Y55B1BR.4 protein. Length = 567 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 67 KLFNKCDRNGITAALVPTLVSKDVKRFQGIH 159 KL +KCD IT L+P +++ +K+ + H Sbjct: 192 KLLDKCDNGIITFKLIPAEINQKLKQKKSSH 222 >AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear anchorage protein1 protein. Length = 8545 Score = 27.5 bits (58), Expect = 9.8 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 79 KCDRNGITAALVPTLVSKDVKRFQGIHMRSSELPRSET 192 K D + + AL+P V++D RF +H+ S E +T Sbjct: 8258 KIDFDDLGEALLPLTVAEDELRFMHVHVESIERQYEDT 8295 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,683,458 Number of Sequences: 27780 Number of extensions: 313294 Number of successful extensions: 624 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 624 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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