Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1272
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 84  RSKWYYSC-PSPYPSLQGCKTLPRNP 158
           R+  YYSC P PYP +     L R P
Sbjct: 188 RNVEYYSCCPEPYPDITYEIRLRRRP 213


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 218 VLWGLTLRAVSLRGSSLERMWI 153
           VL+ + L   +  GSS++ MW+
Sbjct: 570 VLFAVVLAGATCLGSSIKAMWL 591


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 546 LMLHSIF*FLISYIYKGD 493
           + +HSIF  LI +IY  +
Sbjct: 8   MFIHSIFLILIIFIYSNE 25


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 546 LMLHSIF*FLISYIYKGD 493
           + +HSIF  LI +IY  +
Sbjct: 8   MFIHSIFLILIIFIYSNE 25


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = -3

Query: 522 FLISYIYKGDLRISR 478
           F+I ++Y+G++ +S+
Sbjct: 88  FIIEFVYRGEIDVSQ 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,809
Number of Sequences: 438
Number of extensions: 4006
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)