Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1272
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17770.1 68417.m02652 glycosyl transferase family 20 protein ...    29   2.2  
At2g32960.1 68415.m04040 tyrosine specific protein phosphatase f...    28   6.8  

>At4g17770.1 68417.m02652 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 862

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 423 LEFLFTPHPFSRGRLRL-RITNRAA*RMRDVQE 328
           +E L T HP  RGR+ L +I N A  R +DVQE
Sbjct: 356 MEQLLTQHPEKRGRVVLVQIANPARGRGKDVQE 388


>At2g32960.1 68415.m04040 tyrosine specific protein phosphatase
           family protein contains Pfam profile PF03162: Putative
           tyrosine phosphatase family
          Length = 257

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 258 VTCNRAMKSWCVLSVMGPYA*SCFASRKFAGAHVDSLEAFYILG 127
           V C R ++ WC+ S++  Y    FA+ K   +    LE+F + G
Sbjct: 203 VGCMRKLQKWCITSILDEY--KRFAAAKARVSDQRFLESFDVSG 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,279
Number of Sequences: 28952
Number of extensions: 290784
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)