Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1270
(384 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6FIE7 Cluster: RAB1A protein; n=6; Euteleostomi|Rep: R... 51 7e-06
UniRef50_P62820 Cluster: Ras-related protein Rab-1A; n=163; Euka... 51 7e-06
UniRef50_P40392 Cluster: Ras-related protein RIC1; n=36; Eukaryo... 41 0.007
UniRef50_P28188 Cluster: Ras-related protein ARA-5; n=106; Eukar... 37 0.11
UniRef50_A5C3Q9 Cluster: Putative uncharacterized protein; n=1; ... 33 1.9
UniRef50_Q4CZR0 Cluster: Small GTP-binding protein Rab1, putativ... 33 2.5
UniRef50_O18339 Cluster: CG7062-PA; n=5; Endopterygota|Rep: CG70... 33 2.5
UniRef50_A2Y9U8 Cluster: Putative uncharacterized protein; n=2; ... 32 3.3
UniRef50_A5K020 Cluster: Putative uncharacterized protein; n=1; ... 32 4.3
UniRef50_A6RVR3 Cluster: Putative uncharacterized protein; n=2; ... 32 4.3
UniRef50_UPI0000F1D86E Cluster: PREDICTED: similar to RAB8A, mem... 31 9.9
UniRef50_UPI0000E4A51B Cluster: PREDICTED: hypothetical protein;... 31 9.9
UniRef50_Q3W990 Cluster: Putative uncharacterized protein; n=1; ... 31 9.9
UniRef50_Q963D1 Cluster: Small GTP-binding protein Rab8; n=2; En... 31 9.9
>UniRef50_Q6FIE7 Cluster: RAB1A protein; n=6; Euteleostomi|Rep:
RAB1A protein - Homo sapiens (Human)
Length = 129
Score = 51.2 bits (117), Expect = 7e-06
Identities = 26/40 (65%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPST-GXAPAGHVKI 268
TS KN+TNVEQ+FMTMA EIK R+GP +T G A +VKI
Sbjct: 77 TSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 116
>UniRef50_P62820 Cluster: Ras-related protein Rab-1A; n=163;
Eukaryota|Rep: Ras-related protein Rab-1A - Homo sapiens
(Human)
Length = 205
Score = 51.2 bits (117), Expect = 7e-06
Identities = 26/40 (65%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPST-GXAPAGHVKI 268
TS KN+TNVEQ+FMTMA EIK R+GP +T G A +VKI
Sbjct: 153 TSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192
>UniRef50_P40392 Cluster: Ras-related protein RIC1; n=36;
Eukaryota|Rep: Ras-related protein RIC1 - Oryza sativa
subsp. japonica (Rice)
Length = 202
Score = 41.1 bits (92), Expect = 0.007
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS K++TNVE+AFMTMA EIK R+ P+T + V++ +GQP
Sbjct: 150 TSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM-RGQP 193
>UniRef50_P28188 Cluster: Ras-related protein ARA-5; n=106;
Eukaryota|Rep: Ras-related protein ARA-5 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 258
Score = 37.1 bits (82), Expect = 0.11
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS K++TNVEQAFM M+ IK R+ P+ A V+I +GQP
Sbjct: 205 TSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQI-RGQP 248
>UniRef50_A5C3Q9 Cluster: Putative uncharacterized protein; n=1; Vitis
vinifera|Rep: Putative uncharacterized protein - Vitis
vinifera (Grape)
Length = 1025
Score = 33.1 bits (72), Expect = 1.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 104 CCDIFLL*FHCCSVAGVTGTVLVCLYPRVTHARS*VSRQYSXXR-GLAGVDGCP*SILTW 280
CC + + F+CC + G + + V YP+V S ++ + DG P + W
Sbjct: 894 CCHVDDVRFYCCEICGESSQMCVTYYPKVAIDNQYWSNEWRRLKASFRSFDGTPVEVKEW 953
>UniRef50_Q4CZR0 Cluster: Small GTP-binding protein Rab1, putative;
n=2; Eukaryota|Rep: Small GTP-binding protein Rab1,
putative - Trypanosoma cruzi
Length = 210
Score = 32.7 bits (71), Expect = 2.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVK 271
TS K ++NVE+AF MA +IK R+ G A + K
Sbjct: 150 TSAKEASNVEEAFTRMAMDIKKRLAAQGGGAGGAANSK 187
>UniRef50_O18339 Cluster: CG7062-PA; n=5; Endopterygota|Rep:
CG7062-PA - Drosophila melanogaster (Fruit fly)
Length = 219
Score = 32.7 bits (71), Expect = 2.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
TS K + NVE AF +A E+K + + P + + QG+P
Sbjct: 165 TSAKENMNVEDAFRCLANELKRQHDANNVEEVPENTITLGQGKP 208
>UniRef50_A2Y9U8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 888
Score = 32.3 bits (70), Expect = 3.3
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = -1
Query: 330 EIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVT 151
E +A G S+G A P S R +YC+ TH C+TRG ++ +T
Sbjct: 76 EREAAAGGSSSGGGDAAGAAGWVACPVCGESIRGTDYCVNTHLDICLTRGTKR----KLT 131
Query: 150 PATLQQ*NYNKKISQHYDYK*INLN 76
+TL ++++K + DY NLN
Sbjct: 132 QSTLLDFSFSRKATD--DYALNNLN 154
>UniRef50_A5K020 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 839
Score = 31.9 bits (69), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 369 STNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPAS 238
S+ QA A +A G +TG AP G QG+P T A+
Sbjct: 334 SSKTGQAATGQAATGQAATGQAATGQAPTGQTATSQGEPQTAAA 377
>UniRef50_A6RVR3 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 348
Score = 31.9 bits (69), Expect = 4.3
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -1
Query: 309 PPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVTPATLQQ* 130
P +PA +D +PS P SP E +T + + T G Q +VP +P +Q
Sbjct: 49 PVQLPPSPADSDMMDLSRPSPPTSPIILEGQRITRDISRGTPGDMQKASVPKSP---EQK 105
Query: 129 NYNKKISQHY 100
KK SQ+Y
Sbjct: 106 QLAKKRSQYY 115
>UniRef50_UPI0000F1D86E Cluster: PREDICTED: similar to RAB8A, member
RAS oncogene family, partial; n=1; Danio rerio|Rep:
PREDICTED: similar to RAB8A, member RAS oncogene family,
partial - Danio rerio
Length = 220
Score = 30.7 bits (66), Expect = 9.9
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV 313
TS K + NVE AF+T+A +IKA++
Sbjct: 193 TSAKANINVENAFLTLARDIKAKM 216
>UniRef50_UPI0000E4A51B Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 122
Score = 30.7 bits (66), Expect = 9.9
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV 313
TS K + N+EQAFMT+ +IK+++
Sbjct: 67 TSAKANINIEQAFMTLVRDIKSKM 90
>UniRef50_Q3W990 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 327
Score = 30.7 bits (66), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 345 MTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASP 235
+ M T ARVG P AP G + +P TP +P
Sbjct: 27 VAMTTREVARVGRPQAAEAPTGAGRSGPDRPGTPTAP 63
>UniRef50_Q963D1 Cluster: Small GTP-binding protein Rab8; n=2;
Entamoeba histolytica|Rep: Small GTP-binding protein
Rab8 - Entamoeba histolytica
Length = 199
Score = 30.7 bits (66), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPS 250
TS KNS V+ F+++A ++ R+G S P Q QP+
Sbjct: 149 TSAKNSLKVDDCFISLARDVIQRIGESSQSAQPGIVDPTQQTQPT 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,303,360
Number of Sequences: 1657284
Number of extensions: 4966769
Number of successful extensions: 11907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11903
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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