Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   2.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.4  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    22   2.4  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   3.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    20   7.4  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 315 VGPPSTGXAPAGHVKIDQGQPSTP 244
           V PPS+  +  G V  D   P TP
Sbjct: 72  VRPPSSSLSYGGPVNDDVRSPGTP 95


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 315 VGPPSTGXAPAGHVKIDQGQPSTP 244
           V PPS+  +  G V  D   P TP
Sbjct: 228 VRPPSSSLSYGGPVNDDVRSPGTP 251


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 66  TQNCLNLFIYNRNV 107
           ++NCL L +Y RN+
Sbjct: 51  SENCLVLNVYTRNI 64


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 102 NVAIFFCCNFIVVVSRV 152
           N   FFC  FIVV+ ++
Sbjct: 48  NYVTFFCSLFIVVILKL 64


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 315 VGPPSTGXAPAGHVKIDQG 259
           +G PS+G AP G    + G
Sbjct: 271 LGSPSSGPAPPGDFTENMG 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,756
Number of Sequences: 336
Number of extensions: 1306
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)