BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1270 (384 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 3e-05 SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 0.76 SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 1.0 SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 1.3 SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 1.3 SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 26 2.3 >SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 203 Score = 41.9 bits (94), Expect = 3e-05 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPA-GHVKIDQG 259 TS K+STNVEQAF+TM+ +IK R+G + + A VK+ QG Sbjct: 150 TSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQG 192 >SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1427 Score = 27.5 bits (58), Expect = 0.76 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -3 Query: 259 TTIDTGK---SSXX*ILPAYSRACVRDARIETDEDSSGHTRDTTTMKLQQ 119 T +D+G SS + A +RA VR +RI ++S+ DTT ++QQ Sbjct: 1316 TPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQ 1365 >SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 200 Score = 27.1 bits (57), Expect = 1.0 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 381 SXKNSTNVEQAFMTMATEIK 322 S K + NV++AF T+A EIK Sbjct: 152 SAKTNVNVDEAFFTLAREIK 171 >SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1|||Manual Length = 214 Score = 26.6 bits (56), Expect = 1.3 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEI 325 TS +++NVE+AF T+ TEI Sbjct: 152 TSAMDASNVEEAFQTVLTEI 171 >SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding protein 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 567 Score = 26.6 bits (56), Expect = 1.3 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 166 DSSGHTRDTTTMKLQQKNIATLRL*INKFKQFCVTPARPPLTL 38 DS +R ++Q + T INKF F + PA PPL + Sbjct: 417 DSKEQSRGVGFARMQDRK--TAEDIINKFNNFVLDPALPPLQI 457 >SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||Manual Length = 685 Score = 25.8 bits (54), Expect = 2.3 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = -1 Query: 345 MTMATEIKARVGPPST--GXAPAGHVKIDQGQPSTPASPR--XXEYCLLTHERACV 190 + + T A+ G P G APA HV + PA P+ + +L++ ACV Sbjct: 20 LAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHACV 75 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,173,605 Number of Sequences: 5004 Number of extensions: 19328 Number of successful extensions: 37 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 37 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 126307516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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