Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    42   3e-05
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   0.76 
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   1.0  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   1.3  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   2.3  

>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPA-GHVKIDQG 259
           TS K+STNVEQAF+TM+ +IK R+G  +   + A   VK+ QG
Sbjct: 150 TSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQG 192


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 259  TTIDTGK---SSXX*ILPAYSRACVRDARIETDEDSSGHTRDTTTMKLQQ 119
            T +D+G    SS    + A +RA VR +RI   ++S+    DTT  ++QQ
Sbjct: 1316 TPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQ 1365


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 381 SXKNSTNVEQAFMTMATEIK 322
           S K + NV++AF T+A EIK
Sbjct: 152 SAKTNVNVDEAFFTLAREIK 171


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEI 325
           TS  +++NVE+AF T+ TEI
Sbjct: 152 TSAMDASNVEEAFQTVLTEI 171


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 166 DSSGHTRDTTTMKLQQKNIATLRL*INKFKQFCVTPARPPLTL 38
           DS   +R     ++Q +   T    INKF  F + PA PPL +
Sbjct: 417 DSKEQSRGVGFARMQDRK--TAEDIINKFNNFVLDPALPPLQI 457


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -1

Query: 345 MTMATEIKARVGPPST--GXAPAGHVKIDQGQPSTPASPR--XXEYCLLTHERACV 190
           + + T   A+ G P    G APA HV   +     PA P+    +  +L++  ACV
Sbjct: 20  LAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHACV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,605
Number of Sequences: 5004
Number of extensions: 19328
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)