Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1270
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 41 3e-04
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 41 4e-04
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 41 4e-04
05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25... 33 0.077
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 32 0.14
09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256,597... 30 0.72
10_04_0012 + 7555067-7555867 28 2.2
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 28 2.2
11_01_0477 - 3688357-3690042 27 5.1
02_01_0382 - 2772378-2773544 27 5.1
03_06_0637 - 35219212-35219754,35220405-35220587 27 6.7
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 26 8.9
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS K++TNVE+AFMTMA EIK R+ P+T + V++ +GQP
Sbjct: 150 TSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM-RGQP 193
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 40.7 bits (91), Expect = 4e-04
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS KN+TNVEQAFM MA IK R+ P+ A V+I +GQP
Sbjct: 166 TSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQI-RGQP 209
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 40.7 bits (91), Expect = 4e-04
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS KN+TNVEQAFM MA IK R+ P+ A V+I +GQP
Sbjct: 150 TSAKNATNVEQAFMAMAASIKDRMASQPAASNARPPTVQI-RGQP 193
>05_01_0037 -
256891-256998,257347-257502,257753-257824,258737-258784,
259071-259143,259237-259250
Length = 156
Score = 33.1 bits (72), Expect = 0.077
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
TS K S NVE+AF+TM+++IK R
Sbjct: 134 TSAKESINVEEAFLTMSSDIKKR 156
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 32.3 bits (70), Expect = 0.14
Identities = 26/85 (30%), Positives = 40/85 (47%)
Frame = -1
Query: 330 EIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVT 151
E +A G S+G A P S R +YC+ TH C+TRG ++ +T
Sbjct: 76 EREAAAGGSSSGGGDAAGAAGWVACPVCGESIRGTDYCVNTHLDICLTRGTKR----KLT 131
Query: 150 PATLQQ*NYNKKISQHYDYK*INLN 76
+TL ++++K + DY NLN
Sbjct: 132 QSTLLDFSFSRKATD--DYALNNLN 154
>09_02_0222 +
5968232-5968467,5970811-5971187,5972216-5972256,
5972808-5972843
Length = 229
Score = 29.9 bits (64), Expect = 0.72
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEI 325
TS STNVE AFMT+ TEI
Sbjct: 160 TSALESTNVENAFMTVLTEI 179
>10_04_0012 + 7555067-7555867
Length = 266
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 363 NVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQ 256
N E A T+A E ARVG P GH++ GQ
Sbjct: 66 NKEMAAKTVAMEATARVGENGQIRLPYGHIQSPLGQ 101
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 69 QNCLNLFIYNRNVAIFFCCNFIVVVSRV*PELSSSVSIL 185
QN L++ R +FF N +V +R P +SSS+ I+
Sbjct: 380 QNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIM 418
>11_01_0477 - 3688357-3690042
Length = 561
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 246 PASPRXXEYCLLTHERACVTRG*RQTRTVPVTP 148
PA R C ++ R CVT G + V V+P
Sbjct: 271 PADDRDRRRCQMSKRRVCVTNGGTVLKLVDVSP 303
>02_01_0382 - 2772378-2773544
Length = 388
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 372 NSTNVEQAFMTMATEIKARVGPPSTGXAPAGH-VKIDQGQPSTPASPRXXEYCLLTHERA 196
+ST+ + + + KA PPS+ A H + + STPA+P + L + +
Sbjct: 11 SSTSPSPSRLPRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHLRSLSIS 70
Query: 195 CVT 187
C+T
Sbjct: 71 CMT 73
>03_06_0637 - 35219212-35219754,35220405-35220587
Length = 241
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAG 280
TS ++TNV++AF T+ TEI + + AG
Sbjct: 178 TSALDATNVDKAFQTVLTEIYRIISKKALAADEAG 212
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 100 RL*INKFKQFCVTPARPPLTLFSCC 26
RL +N FC P +PPL L C
Sbjct: 143 RLALNITSLFCGDPVKPPLLLLGIC 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,234
Number of Sequences: 37544
Number of extensions: 137914
Number of successful extensions: 340
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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