SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405...    41   3e-04
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864...    41   4e-04
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416...    41   4e-04
05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25...    33   0.077
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    32   0.14 
09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256,597...    30   0.72 
10_04_0012 + 7555067-7555867                                           28   2.2  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    28   2.2  
11_01_0477 - 3688357-3690042                                           27   5.1  
02_01_0382 - 2772378-2773544                                           27   5.1  
03_06_0637 - 35219212-35219754,35220405-35220587                       27   6.7  
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483...    26   8.9  

>01_05_0340 -
           21139885-21139978,21140169-21140272,21140379-21140534,
           21140622-21140693,21140782-21140829,21140923-21140970,
           21141807-21141879,21142333-21142346
          Length = 202

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
           TS K++TNVE+AFMTMA EIK R+   P+T  +    V++ +GQP
Sbjct: 150 TSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM-RGQP 193


>02_05_0161 +
           26384079-26384086,26386173-26386226,26386376-26386448,
           26386775-26386822,26386906-26386953,26387990-26388061,
           26388156-26388311,26388428-26388531,26388628-26388724
          Length = 219

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
           TS KN+TNVEQAFM MA  IK R+   P+   A    V+I +GQP
Sbjct: 166 TSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQI-RGQP 209


>01_01_0565 -
           4159946-4160042,4160140-4160243,4160378-4160533,
           4160629-4160700,4161796-4161843,4161923-4161970,
           4162295-4162367,4163188-4163201
          Length = 203

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
           TS KN+TNVEQAFM MA  IK R+   P+   A    V+I +GQP
Sbjct: 150 TSAKNATNVEQAFMAMAASIKDRMASQPAASNARPPTVQI-RGQP 193


>05_01_0037 -
           256891-256998,257347-257502,257753-257824,258737-258784,
           259071-259143,259237-259250
          Length = 156

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K S NVE+AF+TM+++IK R
Sbjct: 134 TSAKESINVEEAFLTMSSDIKKR 156


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 26/85 (30%), Positives = 40/85 (47%)
 Frame = -1

Query: 330 EIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVT 151
           E +A  G  S+G   A         P    S R  +YC+ TH   C+TRG ++     +T
Sbjct: 76  EREAAAGGSSSGGGDAAGAAGWVACPVCGESIRGTDYCVNTHLDICLTRGTKR----KLT 131

Query: 150 PATLQQ*NYNKKISQHYDYK*INLN 76
            +TL   ++++K +   DY   NLN
Sbjct: 132 QSTLLDFSFSRKATD--DYALNNLN 154


>09_02_0222 +
           5968232-5968467,5970811-5971187,5972216-5972256,
           5972808-5972843
          Length = 229

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEI 325
           TS   STNVE AFMT+ TEI
Sbjct: 160 TSALESTNVENAFMTVLTEI 179


>10_04_0012 + 7555067-7555867
          Length = 266

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 363 NVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQ 256
           N E A  T+A E  ARVG       P GH++   GQ
Sbjct: 66  NKEMAAKTVAMEATARVGENGQIRLPYGHIQSPLGQ 101


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 69  QNCLNLFIYNRNVAIFFCCNFIVVVSRV*PELSSSVSIL 185
           QN L++    R   +FF  N +V  +R  P +SSS+ I+
Sbjct: 380 QNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIM 418


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 246 PASPRXXEYCLLTHERACVTRG*RQTRTVPVTP 148
           PA  R    C ++  R CVT G    + V V+P
Sbjct: 271 PADDRDRRRCQMSKRRVCVTNGGTVLKLVDVSP 303


>02_01_0382 - 2772378-2773544
          Length = 388

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 372 NSTNVEQAFMTMATEIKARVGPPSTGXAPAGH-VKIDQGQPSTPASPRXXEYCLLTHERA 196
           +ST+   + +  +   KA   PPS+  A   H  +  +   STPA+P    + L +   +
Sbjct: 11  SSTSPSPSRLPRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHLRSLSIS 70

Query: 195 CVT 187
           C+T
Sbjct: 71  CMT 73


>03_06_0637 - 35219212-35219754,35220405-35220587
          Length = 241

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAG 280
           TS  ++TNV++AF T+ TEI   +   +     AG
Sbjct: 178 TSALDATNVDKAFQTVLTEIYRIISKKALAADEAG 212


>09_04_0563 +
           18546967-18547407,18547503-18548007,18548271-18548314,
           18548639-18548734,18548830-18549340,18549506-18549540
          Length = 543

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 100 RL*INKFKQFCVTPARPPLTLFSCC 26
           RL +N    FC  P +PPL L   C
Sbjct: 143 RLALNITSLFCGDPVKPPLLLLGIC 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,234
Number of Sequences: 37544
Number of extensions: 137914
Number of successful extensions: 340
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -