BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1270 (384 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 41 3e-04 02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 41 4e-04 01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 41 4e-04 05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-25... 33 0.077 06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 32 0.14 09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256,597... 30 0.72 10_04_0012 + 7555067-7555867 28 2.2 06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 28 2.2 11_01_0477 - 3688357-3690042 27 5.1 02_01_0382 - 2772378-2773544 27 5.1 03_06_0637 - 35219212-35219754,35220405-35220587 27 6.7 09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 26 8.9 >01_05_0340 - 21139885-21139978,21140169-21140272,21140379-21140534, 21140622-21140693,21140782-21140829,21140923-21140970, 21141807-21141879,21142333-21142346 Length = 202 Score = 41.1 bits (92), Expect = 3e-04 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253 TS K++TNVE+AFMTMA EIK R+ P+T + V++ +GQP Sbjct: 150 TSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM-RGQP 193 >02_05_0161 + 26384079-26384086,26386173-26386226,26386376-26386448, 26386775-26386822,26386906-26386953,26387990-26388061, 26388156-26388311,26388428-26388531,26388628-26388724 Length = 219 Score = 40.7 bits (91), Expect = 4e-04 Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253 TS KN+TNVEQAFM MA IK R+ P+ A V+I +GQP Sbjct: 166 TSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQI-RGQP 209 >01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533, 4160629-4160700,4161796-4161843,4161923-4161970, 4162295-4162367,4163188-4163201 Length = 203 Score = 40.7 bits (91), Expect = 4e-04 Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253 TS KN+TNVEQAFM MA IK R+ P+ A V+I +GQP Sbjct: 150 TSAKNATNVEQAFMAMAASIKDRMASQPAASNARPPTVQI-RGQP 193 >05_01_0037 - 256891-256998,257347-257502,257753-257824,258737-258784, 259071-259143,259237-259250 Length = 156 Score = 33.1 bits (72), Expect = 0.077 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316 TS K S NVE+AF+TM+++IK R Sbjct: 134 TSAKESINVEEAFLTMSSDIKKR 156 >06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595, 3598720-3598993,3599390-3599523,3599572-3599634, 3599759-3599846,3599919-3599989,3600898-3601010, 3601836-3602004,3602580-3602671,3602819-3603295, 3603736-3604090 Length = 888 Score = 32.3 bits (70), Expect = 0.14 Identities = 26/85 (30%), Positives = 40/85 (47%) Frame = -1 Query: 330 EIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVT 151 E +A G S+G A P S R +YC+ TH C+TRG ++ +T Sbjct: 76 EREAAAGGSSSGGGDAAGAAGWVACPVCGESIRGTDYCVNTHLDICLTRGTKR----KLT 131 Query: 150 PATLQQ*NYNKKISQHYDYK*INLN 76 +TL ++++K + DY NLN Sbjct: 132 QSTLLDFSFSRKATD--DYALNNLN 154 >09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256, 5972808-5972843 Length = 229 Score = 29.9 bits (64), Expect = 0.72 Identities = 14/20 (70%), Positives = 15/20 (75%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEI 325 TS STNVE AFMT+ TEI Sbjct: 160 TSALESTNVENAFMTVLTEI 179 >10_04_0012 + 7555067-7555867 Length = 266 Score = 28.3 bits (60), Expect = 2.2 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 363 NVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQ 256 N E A T+A E ARVG P GH++ GQ Sbjct: 66 NKEMAAKTVAMEATARVGENGQIRLPYGHIQSPLGQ 101 >06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052, 24030162-24030455,24031490-24031717,24031827-24032006, 24032079-24032238,24032591-24032617,24033426-24033613, 24034269-24034532,24035123-24035218,24035311-24035399, 24035473-24035620,24035842-24036051,24036141-24036440, 24037906-24038248,24038747-24038952,24039071-24039273, 24040021-24040117,24040148-24040222,24040328-24040602, 24041116-24041256,24041469-24042339,24042481-24042520, 24042605-24043050 Length = 1808 Score = 28.3 bits (60), Expect = 2.2 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +3 Query: 69 QNCLNLFIYNRNVAIFFCCNFIVVVSRV*PELSSSVSIL 185 QN L++ R +FF N +V +R P +SSS+ I+ Sbjct: 380 QNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIM 418 >11_01_0477 - 3688357-3690042 Length = 561 Score = 27.1 bits (57), Expect = 5.1 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -1 Query: 246 PASPRXXEYCLLTHERACVTRG*RQTRTVPVTP 148 PA R C ++ R CVT G + V V+P Sbjct: 271 PADDRDRRRCQMSKRRVCVTNGGTVLKLVDVSP 303 >02_01_0382 - 2772378-2773544 Length = 388 Score = 27.1 bits (57), Expect = 5.1 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 372 NSTNVEQAFMTMATEIKARVGPPSTGXAPAGH-VKIDQGQPSTPASPRXXEYCLLTHERA 196 +ST+ + + + KA PPS+ A H + + STPA+P + L + + Sbjct: 11 SSTSPSPSRLPRSASGKAPTSPPSSSNASRRHHQQPPRASASTPATPAPSRHHLRSLSIS 70 Query: 195 CVT 187 C+T Sbjct: 71 CMT 73 >03_06_0637 - 35219212-35219754,35220405-35220587 Length = 241 Score = 26.6 bits (56), Expect = 6.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAG 280 TS ++TNV++AF T+ TEI + + AG Sbjct: 178 TSALDATNVDKAFQTVLTEIYRIISKKALAADEAG 212 >09_04_0563 + 18546967-18547407,18547503-18548007,18548271-18548314, 18548639-18548734,18548830-18549340,18549506-18549540 Length = 543 Score = 26.2 bits (55), Expect = 8.9 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 100 RL*INKFKQFCVTPARPPLTLFSCC 26 RL +N FC P +PPL L C Sbjct: 143 RLALNITSLFCGDPVKPPLLLLGIC 167 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,961,234 Number of Sequences: 37544 Number of extensions: 137914 Number of successful extensions: 340 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 340 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 636799876 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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