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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-07
SB_4971| Best HMM Match : Ras (HMM E-Value=0)                          41   4e-04
SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)                     29   1.7  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.2  
SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)                   27   6.9  
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                27   6.9  
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)                     26   9.2  
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  
SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  

>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 25/44 (56%), Positives = 29/44 (65%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS KN+TNVEQAFMTMA EIK R+GP         +VKI+   P
Sbjct: 171 TSAKNATNVEQAFMTMAAEIKNRMGPSPAPQGAGSNVKINSSTP 214


>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 209

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPST 298
           TS K+STNVE  F TMA E+KA++G P T
Sbjct: 150 TSAKDSTNVESVFRTMAAELKAKLGSPLT 178


>SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)
          Length = 241

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K++TN+E AF  +A E+K R
Sbjct: 189 TSAKDATNIEAAFYRLARELKNR 211


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 273  KIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVTPATLQQ 133
            + D G  S+P++     Y   TH+        + T T P +PAT+ Q
Sbjct: 4650 RADTGAASSPSTTPRPTYSPTTHKTTKAKPTPKTTTTKPTSPATVPQ 4696


>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 215 RQYSXXRGLAGVDGCP*SILTW 280
           R Y+  +GLA +DG P   L W
Sbjct: 61  RNYTDAKGLAWIDGTPVDFLNW 82


>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 357 EQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPAS 238
           E+   T+   IK    PPS   + + +V +D   PS+P S
Sbjct: 74  EETIQTLGANIKQE--PPSPSSSISSYVSMDSSLPSSPES 111


>SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)
          Length = 160

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 137 CSVAGVTGTVLVCLYPRVTHARS*VSRQYSXXRGLAGVDGC 259
           CSV G +  V+ CLY  ++ A S  S       G AGV  C
Sbjct: 111 CSVGGTSVMVIFCLYKSLSKATSLDSLSIIETIG-AGVSSC 150


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 P*SILTWPAGAXP-VEGGPTRALISVAIVMNACS 358
           P S LT   G    V G P+R+ +S++++ N+CS
Sbjct: 6   PSSKLTLTKGIQKLVPGPPSRSTVSISLISNSCS 39


>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 315 VGPPSTGXAPAGHVKIDQGQPSTPASP 235
           +G PS    PAG   + QG P  P +P
Sbjct: 500 MGAPSMSEPPAGGPPMGQGPPRPPTNP 526


>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
          Length = 384

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 177 RQTRTVPVTPATLQQ*NYNKKIS-QHYDY 94
           RQTR  P +P T+ +  YNKK+  + +DY
Sbjct: 184 RQTRQSPASPGTICR-LYNKKLDFEQFDY 211


>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 309 PPSTGXAPAGHVKIDQGQPSTPASP 235
           PPS        +K+DQG+P  P SP
Sbjct: 274 PPSPSNDLISALKLDQGRPLKPPSP 298



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 306 PSTGXAPAGHVKIDQGQPSTPASP 235
           PST       +K+DQG+P  P SP
Sbjct: 317 PSTSNDVISALKLDQGRPLKPPSP 340


>SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 20  VPGPPSRSTVSISLISNSCS 39


>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 299 VEGGPTRALISVAIVMNACS 358
           V G P+R+ +S++++ N+CS
Sbjct: 18  VPGPPSRSTVSISLISNSCS 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,407
Number of Sequences: 59808
Number of extensions: 172534
Number of successful extensions: 467
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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