BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1270 (384 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-07 SB_4971| Best HMM Match : Ras (HMM E-Value=0) 41 4e-04 SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) 29 1.7 SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0 SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2 SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8) 27 6.9 SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9 SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 27 6.9 SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_54892| Best HMM Match : DHH (HMM E-Value=0.057) 26 9.2 SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2 >SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 778 Score = 52.4 bits (120), Expect = 1e-07 Identities = 25/44 (56%), Positives = 29/44 (65%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253 TS KN+TNVEQAFMTMA EIK R+GP +VKI+ P Sbjct: 171 TSAKNATNVEQAFMTMAAEIKNRMGPSPAPQGAGSNVKINSSTP 214 >SB_4971| Best HMM Match : Ras (HMM E-Value=0) Length = 209 Score = 40.7 bits (91), Expect = 4e-04 Identities = 18/29 (62%), Positives = 22/29 (75%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPST 298 TS K+STNVE F TMA E+KA++G P T Sbjct: 150 TSAKDSTNVESVFRTMAAELKAKLGSPLT 178 >SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) Length = 241 Score = 28.7 bits (61), Expect = 1.7 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316 TS K++TN+E AF +A E+K R Sbjct: 189 TSAKDATNIEAAFYRLARELKNR 211 >SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6489 Score = 27.5 bits (58), Expect = 4.0 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -1 Query: 273 KIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVTPATLQQ 133 + D G S+P++ Y TH+ + T T P +PAT+ Q Sbjct: 4650 RADTGAASSPSTTPRPTYSPTTHKTTKAKPTPKTTTTKPTSPATVPQ 4696 >SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 714 Score = 27.1 bits (57), Expect = 5.2 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 215 RQYSXXRGLAGVDGCP*SILTW 280 R Y+ +GLA +DG P L W Sbjct: 61 RNYTDAKGLAWIDGTPVDFLNW 82 >SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 610 Score = 27.1 bits (57), Expect = 5.2 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 357 EQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPAS 238 E+ T+ IK PPS + + +V +D PS+P S Sbjct: 74 EETIQTLGANIKQE--PPSPSSSISSYVSMDSSLPSSPES 111 >SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8) Length = 160 Score = 26.6 bits (56), Expect = 6.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 137 CSVAGVTGTVLVCLYPRVTHARS*VSRQYSXXRGLAGVDGC 259 CSV G + V+ CLY ++ A S S G AGV C Sbjct: 111 CSVGGTSVMVIFCLYKSLSKATSLDSLSIIETIG-AGVSSC 150 >SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.6 bits (56), Expect = 6.9 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 260 P*SILTWPAGAXP-VEGGPTRALISVAIVMNACS 358 P S LT G V G P+R+ +S++++ N+CS Sbjct: 6 PSSKLTLTKGIQKLVPGPPSRSTVSISLISNSCS 39 >SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) Length = 713 Score = 26.6 bits (56), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -1 Query: 315 VGPPSTGXAPAGHVKIDQGQPSTPASP 235 +G PS PAG + QG P P +P Sbjct: 500 MGAPSMSEPPAGGPPMGQGPPRPPTNP 526 >SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_54892| Best HMM Match : DHH (HMM E-Value=0.057) Length = 384 Score = 26.2 bits (55), Expect = 9.2 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = -1 Query: 177 RQTRTVPVTPATLQQ*NYNKKIS-QHYDY 94 RQTR P +P T+ + YNKK+ + +DY Sbjct: 184 RQTRQSPASPGTICR-LYNKKLDFEQFDY 211 >SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 783 Score = 26.2 bits (55), Expect = 9.2 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -1 Query: 309 PPSTGXAPAGHVKIDQGQPSTPASP 235 PPS +K+DQG+P P SP Sbjct: 274 PPSPSNDLISALKLDQGRPLKPPSP 298 Score = 26.2 bits (55), Expect = 9.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 306 PSTGXAPAGHVKIDQGQPSTPASP 235 PST +K+DQG+P P SP Sbjct: 317 PSTSNDVISALKLDQGRPLKPPSP 340 >SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 20 VPGPPSRSTVSISLISNSCS 39 >SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 156 Score = 26.2 bits (55), Expect = 9.2 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = +2 Query: 299 VEGGPTRALISVAIVMNACS 358 V G P+R+ +S++++ N+CS Sbjct: 18 VPGPPSRSTVSISLISNSCS 37 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,339,407 Number of Sequences: 59808 Number of extensions: 172534 Number of successful extensions: 467 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 467 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 656970245 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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