Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1270
(384 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-07
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 41 4e-04
SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34) 29 1.7
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8) 27 6.9
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 27 6.9
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_54892| Best HMM Match : DHH (HMM E-Value=0.057) 26 9.2
SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 52.4 bits (120), Expect = 1e-07
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
TS KN+TNVEQAFMTMA EIK R+GP +VKI+ P
Sbjct: 171 TSAKNATNVEQAFMTMAAEIKNRMGPSPAPQGAGSNVKINSSTP 214
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPST 298
TS K+STNVE F TMA E+KA++G P T
Sbjct: 150 TSAKDSTNVESVFRTMAAELKAKLGSPLT 178
>SB_33743| Best HMM Match : Ras (HMM E-Value=2e-34)
Length = 241
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
TS K++TN+E AF +A E+K R
Sbjct: 189 TSAKDATNIEAAFYRLARELKNR 211
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 273 KIDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVPVTPATLQQ 133
+ D G S+P++ Y TH+ + T T P +PAT+ Q
Sbjct: 4650 RADTGAASSPSTTPRPTYSPTTHKTTKAKPTPKTTTTKPTSPATVPQ 4696
>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 714
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 215 RQYSXXRGLAGVDGCP*SILTW 280
R Y+ +GLA +DG P L W
Sbjct: 61 RNYTDAKGLAWIDGTPVDFLNW 82
>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 357 EQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPAS 238
E+ T+ IK PPS + + +V +D PS+P S
Sbjct: 74 EETIQTLGANIKQE--PPSPSSSISSYVSMDSSLPSSPES 111
>SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)
Length = 160
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 137 CSVAGVTGTVLVCLYPRVTHARS*VSRQYSXXRGLAGVDGC 259
CSV G + V+ CLY ++ A S S G AGV C
Sbjct: 111 CSVGGTSVMVIFCLYKSLSKATSLDSLSIIETIG-AGVSSC 150
>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 260 P*SILTWPAGAXP-VEGGPTRALISVAIVMNACS 358
P S LT G V G P+R+ +S++++ N+CS
Sbjct: 6 PSSKLTLTKGIQKLVPGPPSRSTVSISLISNSCS 39
>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
Length = 713
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 315 VGPPSTGXAPAGHVKIDQGQPSTPASP 235
+G PS PAG + QG P P +P
Sbjct: 500 MGAPSMSEPPAGGPPMGQGPPRPPTNP 526
>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
Length = 384
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 177 RQTRTVPVTPATLQQ*NYNKKIS-QHYDY 94
RQTR P +P T+ + YNKK+ + +DY
Sbjct: 184 RQTRQSPASPGTICR-LYNKKLDFEQFDY 211
>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 309 PPSTGXAPAGHVKIDQGQPSTPASP 235
PPS +K+DQG+P P SP
Sbjct: 274 PPSPSNDLISALKLDQGRPLKPPSP 298
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 306 PSTGXAPAGHVKIDQGQPSTPASP 235
PST +K+DQG+P P SP
Sbjct: 317 PSTSNDVISALKLDQGRPLKPPSP 340
>SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 20 VPGPPSRSTVSISLISNSCS 39
>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +2
Query: 299 VEGGPTRALISVAIVMNACS 358
V G P+R+ +S++++ N+CS
Sbjct: 18 VPGPPSRSTVSISLISNSCS 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,407
Number of Sequences: 59808
Number of extensions: 172534
Number of successful extensions: 467
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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