Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D84312-1|BAA21705.1|  205|Drosophila melanogaster rab1 protein.        65   3e-11
AE014297-2965|AAF55873.1|  205|Drosophila melanogaster CG3320-PA...    65   3e-11
D84347-1|BAA21711.1|  207|Drosophila melanogaster rab8 protein.        33   0.13 
AY069671-1|AAL39816.1|  207|Drosophila melanogaster LD44762p pro...    33   0.13 
AE014296-3237|AAF49101.1|  207|Drosophila melanogaster CG8287-PA...    33   0.13 
AB112933-1|BAD07038.1|  207|Drosophila melanogaster Rab8 protein.      33   0.13 
D84348-1|BAA21712.1|  219|Drosophila melanogaster rab-related pr...    33   0.17 
AY071400-1|AAL49022.1|  219|Drosophila melanogaster RE48347p pro...    33   0.17 
AE014296-1412|AAF50452.1|  219|Drosophila melanogaster CG7062-PA...    33   0.17 
D84315-1|BAA21708.1|  214|Drosophila melanogaster rab11 protein.       28   3.6  
BT001785-1|AAN71540.1|  214|Drosophila melanogaster RH21315p pro...    28   3.6  
AY113404-1|AAM29409.1|  214|Drosophila melanogaster RE11886p pro...    28   3.6  
AY070528-1|AAL47999.1|  214|Drosophila melanogaster GM06568p pro...    28   3.6  
AE014297-2931|AAN13849.1|  214|Drosophila melanogaster CG5771-PB...    28   3.6  
AE014297-2930|AAF55850.1|  214|Drosophila melanogaster CG5771-PA...    28   3.6  
AB035354-1|BAA87880.1|  214|Drosophila melanogaster Drab11 protein.    28   3.6  
AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA...    27   8.4  

>D84312-1|BAA21705.1|  205|Drosophila melanogaster rab1 protein.
          Length = 205

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS K++TNVEQAFMTMA EIK RVGPPS+    A  VKIDQG+P
Sbjct: 153 TSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRP 196


>AE014297-2965|AAF55873.1|  205|Drosophila melanogaster CG3320-PA,
           isoform A protein.
          Length = 205

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS K++TNVEQAFMTMA EIK RVGPPS+    A  VKIDQG+P
Sbjct: 153 TSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRP 196


>D84347-1|BAA21711.1|  207|Drosophila melanogaster rab8 protein.
          Length = 207

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K S NVE+AF+T+A++IKA+
Sbjct: 150 TSAKASINVEEAFLTLASDIKAK 172


>AY069671-1|AAL39816.1|  207|Drosophila melanogaster LD44762p
           protein.
          Length = 207

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K S NVE+AF+T+A++IKA+
Sbjct: 150 TSAKASINVEEAFLTLASDIKAK 172


>AE014296-3237|AAF49101.1|  207|Drosophila melanogaster CG8287-PA
           protein.
          Length = 207

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K S NVE+AF+T+A++IKA+
Sbjct: 150 TSAKASINVEEAFLTLASDIKAK 172


>AB112933-1|BAD07038.1|  207|Drosophila melanogaster Rab8 protein.
          Length = 207

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKAR 316
           TS K S NVE+AF+T+A++IKA+
Sbjct: 150 TSAKASINVEEAFLTLASDIKAK 172


>D84348-1|BAA21712.1|  219|Drosophila melanogaster rab-related
           protein 3 protein.
          Length = 219

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS K + NVE AF  +A E+K +    +    P   + + QG+P
Sbjct: 165 TSAKENMNVEDAFRCLANELKRQHDANNVEEVPENTITLGQGKP 208


>AY071400-1|AAL49022.1|  219|Drosophila melanogaster RE48347p
           protein.
          Length = 219

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS K + NVE AF  +A E+K +    +    P   + + QG+P
Sbjct: 165 TSAKENMNVEDAFRCLANELKRQHDANNVEEVPENTITLGQGKP 208


>AE014296-1412|AAF50452.1|  219|Drosophila melanogaster CG7062-PA
           protein.
          Length = 219

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
           TS K + NVE AF  +A E+K +    +    P   + + QG+P
Sbjct: 165 TSAKENMNVEDAFRCLANELKRQHDANNVEEVPENTITLGQGKP 208


>D84315-1|BAA21708.1|  214|Drosophila melanogaster rab11 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>BT001785-1|AAN71540.1|  214|Drosophila melanogaster RH21315p
           protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AY113404-1|AAM29409.1|  214|Drosophila melanogaster RE11886p
           protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AY070528-1|AAL47999.1|  214|Drosophila melanogaster GM06568p
           protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AE014297-2931|AAN13849.1|  214|Drosophila melanogaster CG5771-PB,
           isoform B protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AE014297-2930|AAF55850.1|  214|Drosophila melanogaster CG5771-PA,
           isoform A protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AB035354-1|BAA87880.1|  214|Drosophila melanogaster Drab11 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHV 274
           TS  +STNVE AF  + TEI   V        P G V
Sbjct: 153 TSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDV 189


>AE014296-2536|AAF49616.1| 2139|Drosophila melanogaster CG6498-PA
            protein.
          Length = 2139

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 333  TEIKARVGPPSTGXAPAGHVK-IDQGQPSTPASPRXXEYCLLTHERACVTRG*RQTRTVP 157
            T++KA   P      PAG  K +DQG+ +TP +P+        H   C T     T T P
Sbjct: 2052 TKVKATEQPEME---PAGKSKKVDQGKTTTPGTPKTK-----PHNSGCKT---SMTTTKP 2100

Query: 156  VTPA 145
             +P+
Sbjct: 2101 ASPS 2104


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,437,190
Number of Sequences: 53049
Number of extensions: 242534
Number of successful extensions: 572
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)