Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101310-3|AAC69218.1|  205|Caenorhabditis elegans Rab family pr...    50   6e-07
U97191-2|AAB52431.1|  214|Caenorhabditis elegans Uncoordinated p...    29   1.5  
AL132865-6|CAB60605.1|  210|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF003139-1|AAB54158.1|  211|Caenorhabditis elegans Rab family pr...    27   3.4  
L16621-1|ABD63204.1|  281|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z50109-4|CAA90441.1|  382|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AF101310-3|AAC69218.1|  205|Caenorhabditis elegans Rab family
           protein 1 protein.
          Length = 205

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGP-PSTGXAPAGHVKIDQGQP 253
           TS K+STNVEQAF+TMA+EIK+R+GP    G AP   V+I   QP
Sbjct: 153 TSAKSSTNVEQAFLTMASEIKSRMGPVQGAGGAPG--VRITGSQP 195


>U97191-2|AAB52431.1|  214|Caenorhabditis elegans Uncoordinated
           protein 108 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEI--KARVGPPSTGXAPAGHVKIDQGQPSTPASP 235
           TS K + NVE+AF+  A EI  K + G         G     Q  PS+P SP
Sbjct: 148 TSAKTAANVEEAFIDTAKEIYRKIQEGVFDINNEANGIKLGPQHSPSSPNSP 199


>AL132865-6|CAB60605.1|  210|Caenorhabditis elegans Hypothetical
           protein Y62E10A.9 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASP 235
           TS K + NV+ AF+ +AT +K +          +G  ++  G  +   SP
Sbjct: 153 TSAKGNVNVDNAFLELATILKRQYDQGVVEQGSSGTFQLGSGGTTALGSP 202


>AF003139-1|AAB54158.1|  211|Caenorhabditis elegans Rab family
           protein 11.1 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -1

Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYCLL 211
           TS  +STNVE AF  + TEI   V     G    G+         +PAS    + C +
Sbjct: 153 TSALDSTNVEAAFTNILTEIYKSVSNKHVGTDRQGYGGGSGTIIPSPASDPPKKQCCI 210


>L16621-1|ABD63204.1|  281|Caenorhabditis elegans Hypothetical
           protein ZK688.9 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  SN*ITLAVDERASHKIV*IYLFIIVMLRYFFVVI 129
           S+ ITL  DE A H I  +   + VM  YFFV++
Sbjct: 171 SSSITLFEDELADHGIAQLLARVRVMRGYFFVLL 204


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 330 EIKARVG-PPSTGXAPAGHVKIDQGQPSTPAS 238
           EI+  +G PPS     +GHV     QPS+P S
Sbjct: 409 EIEKYLGKPPSVTSIDSGHVSRGVSQPSSPIS 440


>Z50109-4|CAA90441.1|  382|Caenorhabditis elegans Hypothetical
           protein C09H10.6 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 196 VRDARIETDEDSSGHTRDTTTMKLQQKNIATL 101
           V+DA  ++DE  +G T +  T++ ++K +A L
Sbjct: 14  VKDASGDSDEKGNGTTTEEETVEQKEKRLAEL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,791,813
Number of Sequences: 27780
Number of extensions: 122036
Number of successful extensions: 296
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)