Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1270
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.17 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   2.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   3.7  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   3.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   3.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 318 RVGPPSTGXAPAGHVKIDQGQPSTP 244
           R   PS G    GH     G PSTP
Sbjct: 111 RSASPSPGMGHMGHTPTPNGHPSTP 135


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 246 PASPRXXEYCLLTHERACVTRG*RQTRT 163
           P+S       + +H+++C+ R  R+T+T
Sbjct: 277 PSSTSKKSGIVRSHQQSCINRVARETKT 304


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 129 NYNKKISQHYDYK*INLNNF 70
           NYN     +Y+Y   N NN+
Sbjct: 95  NYNNNNYNNYNYNNNNYNNY 114


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 253 IDTGKSSXX*ILPAYSRACVRDARIETDEDSSGH 152
           +  G +    ++   +  C+ +A+ ETDE + G+
Sbjct: 97  VHAGNADDIQLVKGIANECIENAKGETDECNIGN 130


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -3

Query: 253 IDTGKSSXX*ILPAYSRACVRDARIETDEDSSGH 152
           +  G +    ++   +  C+ +A+ ETDE + G+
Sbjct: 97  VHAGNADDIQLVKGIANECIENAKGETDECNIGN 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,846
Number of Sequences: 438
Number of extensions: 1825
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)