Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1270
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati... 42 2e-04
At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati... 40 4e-04
At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putati... 39 0.001
At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small GTP... 37 0.004
At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putati... 34 0.028
At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putati... 34 0.037
At5g65270.1 68418.m08210 Ras-related GTP-binding family protein ... 28 1.9
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 28 2.5
At3g12160.1 68416.m01516 Ras-related GTP-binding family protein ... 27 4.3
At5g55850.1 68418.m06960 nitrate-responsive NOI protein, putativ... 26 7.5
At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putati... 26 7.5
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 26 7.5
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein... 26 9.9
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein... 26 9.9
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein... 26 9.9
>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303750 from [Pisum
sativum]
Length = 202
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
TS KN+TNVE+AFM M IK R+ G A V+I +GQP
Sbjct: 150 TSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPTVQI-RGQP 192
>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
very strong similarity to RAB1C [Lotus corniculatus var.
japonicus] GI:1370166; contains Pfam profile PF00071:
Ras family
Length = 202
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQP 253
TS KN+TNVE+AFM M IK R+ G + V+I +GQP
Sbjct: 150 TSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPTVQI-RGQP 192
>At3g11730.1 68416.m01439 Ras-related GTP-binding protein, putative
similar to Rab1-like small GTP-binding protein
GI:4096662 from [Petunia x hybrida]
Length = 205
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKID-QGQP 253
TS K+S NVEQAF+T+A EIK ++G + +G + +GQP
Sbjct: 150 TSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQP 194
>At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small
GTP-binding protein, putative identical to Ras-related
protein ARA-5 SP:P28188 from [Arabidopsis thaliana]
Length = 203
Score = 37.1 bits (82), Expect = 0.004
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARV-GPPSTGXAPAGHVKIDQGQP 253
TS K++TNVEQAFM M+ IK R+ P+ A V+I +GQP
Sbjct: 150 TSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQI-RGQP 193
>At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871508 from [Pisum
sativum]
Length = 216
Score = 34.3 bits (75), Expect = 0.028
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXEYC 217
TS K + NVE FM++A +IK R+ T P G +KI + + +S C
Sbjct: 158 TSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQG-IKITKQDTAASSSTAEKSAC 212
>At3g09900.1 68416.m01180 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:871510 from [Pisum
sativum]; contains Pfam profile: PF00071 Ras family
Length = 218
Score = 33.9 bits (74), Expect = 0.037
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASPRXXE 223
TS K + NVEQ F+++A +IK R+ T P G +KI + + +S E
Sbjct: 158 TSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQG-IKITKQDANKASSSSTNE 210
>At5g65270.1 68418.m08210 Ras-related GTP-binding family protein
similar to GTP-binding protein RAB11A GI:1370142 from
[Lotus japonicus]; contains Pfam profile: PF00071 Ras
family
Length = 226
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEI 325
TS N+TNVE AF T+ TEI
Sbjct: 159 TSAFNATNVESAFSTVLTEI 178
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 142 CRGCDRNCPRLS-LSSRHARTLVSKQ 216
C CDRN + LS RH+RTLV ++
Sbjct: 25 CLSCDRNVHSANALSKRHSRTLVCER 50
>At3g12160.1 68416.m01516 Ras-related GTP-binding family protein
similar to ras-related GTP-binding protein RGP1
SP:P25766 from [Oryza sativa];contains Pfam profile:
PF00071 Ras family
Length = 222
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEI 325
TS +TNVE AF+T+ TEI
Sbjct: 157 TSALEATNVETAFLTILTEI 176
>At5g55850.1 68418.m06960 nitrate-responsive NOI protein, putative
similar to nitrate-induced NOI protein [Zea mays]
GI:2642213
Length = 79
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 309 PPSTGXAPAGHVKIDQGQPSTPASPRXXEYCL 214
P S G + GHVK G PS P P+ C+
Sbjct: 42 PGSPGKSSEGHVKSGGGDPSKP-QPKKWLCCM 72
>At4g39990.1 68417.m05663 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303738 from [Pisum
sativum]
Length = 224
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 384 TSXKNSTNVEQAFMTMATEI 325
TS N+TNVE +F T+ T+I
Sbjct: 159 TSALNATNVENSFNTLMTQI 178
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 345 MTMATEIKARVGPPSTGXAPAGHVKIDQGQPSTPASP 235
M +A + A PST +P PSTP++P
Sbjct: 112 MKLAVPVLAAAPSPSTPSSPPSTPSTPSSPPSTPSTP 148
>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 142 CRGCDRNCPRLS-LSSRHARTLVSKQ 216
C CDR+ + LS RH+RTLV ++
Sbjct: 25 CLSCDRSVHSANALSKRHSRTLVCER 50
>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
similar to zinc finger protein GB:BAA33206 [Oryza
sativa]
Length = 372
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 142 CRGCDRNCPRLS-LSSRHARTLVSKQ 216
C CDR+ + LS RH+RTLV ++
Sbjct: 25 CLSCDRSVHSANALSKRHSRTLVCER 50
>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 268
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 104 CCDIFLL*FHCCSVAGVTGTVLVCLYPRVTHARS*VSRQ 220
CCD+ L CC + T + VC +TH S +RQ
Sbjct: 218 CCDLNLTPATCCCCSSSTSSSSVC-SSALTHTSSNDNRQ 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,233,571
Number of Sequences: 28952
Number of extensions: 104907
Number of successful extensions: 243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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