Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1266
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0274 + 16426892-16427101,16427193-16427572,16427655-164279...    28   6.0  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    28   6.0  

>10_08_0274 +
           16426892-16427101,16427193-16427572,16427655-16427927,
           16428315-16428390,16428476-16428655
          Length = 372

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 562 EATVQWLCFIFPHFCTFTDTKLLINPRYYTFKPE 663
           +A    +C +FP F +   +   +NPRY++  PE
Sbjct: 319 DAIFDKICGMFPGFMSMAYSVQAVNPRYWSNNPE 352


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 294 IPLNSSIEVS*NGSFYWSIILSYVVSFNSIKFGIN 190
           +P+N++  +S      W +I +  V F+S+KFGI+
Sbjct: 833 VPVNTTCSLSICREILWFLIGTREVPFSSVKFGIS 867


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,361
Number of Sequences: 37544
Number of extensions: 284871
Number of successful extensions: 438
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)