Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1266
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)               29   4.6  
SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_29038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
          Length = 1082

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 84  RRSMKFPTLIENIEKECRIINFFKMMHK 1
           R  + +P + E IE+ CR+ +F + MHK
Sbjct: 813 RTCVWWPKMDEQIEEACRVCSFAEFMHK 840


>SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 521 FTEIFSVDFLEDPEKLPFSGFVSFFHIFALSQILNC**TPVITHLNLK 664
           F  +    F EDP++     FVSF ++  L++  NC    V+  LNLK
Sbjct: 192 FINVAIKQFREDPKR-----FVSFQYVILLNEAHNCLMAVVVLLLNLK 234


>SB_29038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 GVQSFCFIYYYIDIACTKYVFDRNDFT 186
           G  S+C I       CT+YVFD N+FT
Sbjct: 86  GQSSWCPINKCGCANCTQYVFDENEFT 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,686,540
Number of Sequences: 59808
Number of extensions: 348523
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)