Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1261
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    27   2.1  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    26   6.4  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 311 NIVITSRESAPPICNNPRDLKNLNTHFAYSLKFRFTIKQTLP 186
           N+   +R ++PP    P+ +KN N++F  S    F+  +T P
Sbjct: 285 NVKKGNRLNSPPFITIPQSIKNTNSNFLLSSPSLFSDTRTRP 326



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 543 LEPQCTLKTAAEAKFRAQNS 484
           LE +C L TAA+  FR++NS
Sbjct: 218 LESRCALHTAAKDPFRSKNS 237


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 538 TAMYTEDSSGSEVPCPKFELCVNTCWRVFEQNHR---STSLDISAITKLDYVDSCCYRSG 368
           +++YTE+ SG+++   ++   VN C        R       D  +  ++ +  +C Y +G
Sbjct: 127 SSLYTENYSGTKILIEEYVREVNNCLEFLYHTKRLSYDVKCDFFSAARISFGTTCLYFNG 186

Query: 367 SGLF 356
              F
Sbjct: 187 GTAF 190


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 528 YIAVPRNMYLSLRSIANKMILFIL 599
           Y+  PRNM+LS+ + ++ ++ F+L
Sbjct: 131 YVQFPRNMHLSVLAASHVLVEFLL 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,582
Number of Sequences: 5004
Number of extensions: 64062
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)